GEO DataSets

(Submitter supplied) Using 3' RACE-seq method, we measured uridylation frequencies of GFLV RNAs (K30 and B844 isolates) for total RNA of C. quinoa infected plants or for purified RNA from GFLV virions.

Organism:

Arabidopsis thaliana

Type:

Expression profiling by high throughput sequencing

Platform:

GPL17970

4 Samples

Download data: TXT

(Submitter supplied) Using 3' RACE-seq method, we analyzed global 3’ terminal RNA uridylation profiles of Secovirus RNAs.

Organism:

Nicotiana benthamiana; Vitis vinifera; Chenopodium quinoa

Type:

Expression profiling by high throughput sequencing

5 related Platforms

33 Samples

Download data: TXT

(Submitter supplied) Using 3' RACE-seq method, we analyzed global 3’ terminal RNA uridylation profiles for representatives of the main families of positive single-stranded RNA phytoviruses.

Organism:

Chenopodium quinoa; Spinacia oleracea; Arabidopsis thaliana; Vitis vinifera; Nicotiana benthamiana; Nicotiana obtusifolia

Type:

Expression profiling by high throughput sequencing

9 related Platforms

27 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Chenopodium quinoa; Spinacia oleracea; Arabidopsis thaliana; Vitis vinifera; Nicotiana benthamiana; Nicotiana obtusifolia

Type:

Expression profiling by high throughput sequencing

12 related Platforms

140 Samples

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(Submitter supplied) Total blood white blood cells from a FPIES subject were treated with individual treatmens of 2 foods that were safe for the subject (pear and breast milk), two foods that were triggers (quinoa and sweet potato), and 19 foods of unknown status for the subject. These treatments were compared to LPS treatment and untreated.

Organism:

Homo sapiens

Type:

Expression profiling by array

Platform:

GPL17692

23 Samples

Download data: CEL

(Submitter supplied) Quinoa (Chenopodium quinoa) is a highly nutritious crop showing a remarkable tolerance to multiple abiotic stresses. The Catharanthus roseus RLK1-like kinase (CrRLK1L) family is involved in multiple processes during plant growth and stress responses. However, little is known about the members of the CqCrRLK1L subfamily and their biological functions. In this study, up to 26 CqCrRLK1L members were identified in quinoa genome. more...

Organism:

Chenopodium quinoa

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32059

15 Samples

Download data: XLS

(Submitter supplied) We generated 70.9 Gb of high-quality sequencing data (~7.88 Gb per sample) and catalogued the expression profiles of 54，238 annotated Chenopodium quinoa genes in each sample. These genes have known or potential roles in the roots, stems, and leaves of quinoa. Therefore, we are appealing candidates for further investigation of the gene expression and associated regulatory mechanisms.

Organism:

Chenopodium quinoa

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26301

9 Samples

Download data: FA, TXT

(Submitter supplied) Purpose and strategy: Grapevine fanleaf virus (GFLV) causes variable symptoms in most vineyards worldwide. To better understand GFLV-grapevine interactions in relation to symptom development, field and greenhouse trials were conducted with a grapevine genotype that exhibits distinct symptoms in response to a severe and a mild strain of GFLV. Results: After validation of the infection status of the experimental vines by high throughput sequencing, the transcriptomic and metabolomic profiles in plants infected with the two viral strains were tested and compared by RNA-Seq and LC-MS, respectively, in the differentiating grapevine genotype. more...

Organism:

Vitis vinifera

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22342

9 Samples

Download data: TXT

(Submitter supplied) We generated 95.37 Gb of high-quality sequencing data (~7.95 Gb per sample). The analysis showed differences of transcriptomes between the common white sweet quinoa and the yellow bitter quinoa. We identified numerous differentially expressed genes that exhibited distinct expression patterns. These genes have known or potential roles in taste of quinoa fruit.Therefore, we are appealing candidates for further investigation of the gene expression and associated regulatory mechanisms related to the accumulation of bitter saponins in C. more...

Organism:

Chenopodium quinoa

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26301

12 Samples

Download data: FA, TXT

(Submitter supplied) Quinoa is a highly nutritious seudocereal crop that is not well adapted to heat. Improving understanding of quinoa responses to heat would help expand its cultivation to regions with warmer climates. This study profiled gene expression of quinoa plants from accession QQ74 (PI 614886) treated with high tempreatures during anthesis of the main panicle, which lasted 11 days. Heat was applied in four different treatments to profile gene expression changes from root or shoot heating. more...

Organism:

Chenopodium quinoa

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26301

24 Samples

Download data: TXT

(Submitter supplied) The hypersensitive response (HR) system of Chenopodium spp. confers broad-spectrum virus resistance. However, scant knowledge exists at the genomic level for Chenopodium, thus impeding the advanced molecular research of this attractive feature. Hence we took advantage of RNA-seq to survey the foliar transcriptome of C. amaranticolor, one Chenopodium species being widely used as laboratory indicator for pathogenic viruses, in order to facilitate the characterization of the HR-type of virus resistance. more...

Organism:

Chenopodium amaranticolor

Type:

Expression profiling by high throughput sequencing

Platform:

GPL15649

6 Samples

Download data: TXT

(Submitter supplied) 70mer probes were designed to detect plant viruses infection in genus level. This microarray platform is able to detect 169 plant virus species of 13 virus genera.

Organism:

Potexvirus; Potato virus X; Plum pox virus; Comovirus; Bean pod mottle virus; Nepovirus; Arabis mosaic virus; Tobravirus; Prunus necrotic ringspot virus; Taraxacum officinale; Pomovirus; Sobemovirus; Southern bean mosaic virus; Tomato ringspot virus; Cucumovirus; Carlavirus; Capillovirus; Tobacco ringspot virus; Potyvirus; Tobamovirus; Tobacco mosaic virus; Ilarvirus; unidentified; Zinnia elegans; Orthotospovirus; Orthotospovirus tomatomaculae

Type:

Expression profiling by array

Platform:

GPL8484

17 Samples

Download data: GPR

(Submitter supplied) It has been strongly argued that plant cells should have a means of sensing sugars at the cell surface, so that extracellular and intracellular sugars can be sensed separately and their metabolism coordinated (Lalonde et al., Plant Cell, 11, 707-26, 2000). There is good evidence for an intracellular hexokinase-dependent pathway of hexose sensing in plants, but very little evidence for a hexokinase-independent signalling pathway, such as that provided by SNF3 or RGT2 in yeast. more...

Organism:

Arabidopsis thaliana

Type:

Expression profiling by array

Platform:

GPL198

6 Samples

Download data: CEL