GEO DataSets

(Submitter supplied) To screen genes related to the development of sweet potato tuberous roots, the high throughput sequencing of different stages of sweet potato tuberous roots was performed. The fibrous roots (FR; roots at 20 dap), developing tuberous roots (DR; roots at 60 dap) and mature tuberous roots (MR; roots at 120 dap) of Ipomoea batatas (L.) Taizhong 6 and MBP3 overexpressed lines were used for transcriptome analysis. more...

Organism:

Ipomoea batatas

Type:

Expression profiling by high throughput sequencing

Platform:

GPL30016

12 Samples

Download data: TXT

(Submitter supplied) In the process of field production, crops are often affected by a variety of abiotic stresses, among which heat (HT) and drought (DR) stress are the most common co-stresses in summer. Although a large number of studies have been carried out on HT and DR stress respectively, little is known about how their combination (DH) affects plants. In this study, we investigated the responses of sweetpotato to HT, DR or DH stress by RNA-seq and DIA technologies, and set up a controlled experiment and quantified gene expression and protein concentrations from paired samples. more...

Organism:

Ipomoea batatas

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22614

12 Samples

Download data: TXT

(Submitter supplied) The formation and development of storage roots is an intricate process regulated via a complex transcriptional regulatory network. To significantly advance our understanding of the molecular mechanisms governing storage root initiation and development in sweet potato, we performed a comprehensive analysis of transcriptome dynamics during root development.

Organism:

Ipomoea batatas

Type:

Expression profiling by high throughput sequencing

Platform:

GPL30016

28 Samples

Download data: TXT

(Submitter supplied) To better understand the regulatory mechanisms of IbBBX24-mediated Fusarium oxysporum Schlecht. f. sp. batatas (Fob) resistance, we performed ChIP-Seq analysis using overexpression line infected with Fob at 1 dpi.

Organism:

Ipomoea batatas

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL22614

1 Sample

Download data: BW, TXT

(Submitter supplied) To better understand the regulatory mechanisms of IbBBX24-mediated Fusarium oxysporum Schlecht. f. sp. batatas (Fob) resistance, we performed RNA-Seq analysis using overexpression line, RNA interference and WT plants infected with Fob at 1 dpi.

Organism:

Ipomoea batatas

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23698

6 Samples

Download data: FA, GTF, TXT

(Submitter supplied) Leaf shape is a spectacularly diverse trait that influences various aspects of plant physiology, and is even correlated with crop yield and quality in multiple species. However, only a few genetic dissections of leaf shape have been accomplished at a species-wide level. Here, we perform an initial characterization of leaf shape variation in Ipomoea batatas, the sweetpotato, at multiple scales of analysis. more...

Organism:

Ipomoea batatas

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22614

19 Samples

Download data: TXT

(Submitter supplied) Plant microRNAs (miRNAs) have emerged as important regulators in developmental processes and stress responses in plants. To identify the wound-responsive miRNAs in the leaves of sweet potato, small RNA deep sequencing was conducted on unwounded and wounded leaves (30 min). Total RNAs were isolated for library construction and analyzed by RNA-sequencing via Illumina Genome Analyzer IIx platform. About 16 million total reads were obtained for each sample.

Organism:

Ipomoea batatas

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL17085

2 Samples

Download data: TXT

(Submitter supplied) In this study, we compared the root transcriptomes between high and low starch content species in three different growth and development periods.This provided a new perspective and resources for the molecular mechanisms study of storage root formation and development process.

Organism:

Ipomoea batatas

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23698

18 Samples

Download data: FASTA, TXT

(Submitter supplied) Small RNAs (sRNAs) play important roles in plants encountering stress environments. However, limited research has been conducted on the sRNAs involved in plant wound responses. To identify potential roles for the wounding-related sRNAs, sRNA deep sequencing was used. After leaves were wounded for 0.5 hour, total RNAs from unwounded and wounded leaves were isolated for sRNA library construction. The Illumina platform was used to sequence sRNA libraries. more...

Organism:

Ipomoea batatas

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL17085

2 Samples

Download data: TXT

(Submitter supplied) The interrelationships between our diets and the structure and operations of our gut microbial communities are poorly understood. A model microbial community of ten sequenced human gut bacteria was introduced into gnotobiotic mice and changes in the abundance of each species were measured in response to randomized perturbations of four defined ingredients in the host diet. From the responses, we developed a statistical model that predicted over 50% of the variation in species abundance in response to the diet perturbations and were able to identify which factors in the diet best explained the changes seen for each community member. more...

Organism:

Blautia hydrogenotrophica DSM 10507; Escherichia coli str. K-12 substr. MG1655; Marvinbryantia formatexigens DSM 14469; Bacteria; [Clostridium] symbiosum; Bacteroides thetaiotaomicron VPI-5482; Bacteroides ovatus ATCC 8483; Bacteroides caccae ATCC 43185; Agathobacter rectalis ATCC 33656; Desulfovibrio piger GOR1; Collinsella aerofaciens ATCC 25986

Type:

Expression profiling by high throughput sequencing; Other

Platform:

GPL11535

490 Samples

Download data: TXT