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dbVar

Database of genomic structural variation

nsv980492

Organism: Homo sapiens

Study:nstd82 (Sudmant et al. 2013)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:45,938

Publication(s):Sudmant et al. 2013

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 832 SVs from 85 studies. See in: genome view

Remapped(Score: Perfect):34,782,593-34,828,530

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv980492	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	34,782,593	34,828,530
nsv980492	Remapped	Perfect	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	274,922	320,859
nsv980492	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	34,784,215	34,830,152
nsv980492	Remapped	Perfect	GRCh37.p13	PATCHES	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	274,922	320,859
nsv980492	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000004.10	Chr4	34,460,610	34,506,547

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv2760274	deletion	HGDP00665	Sequencing	Read depth	0	17,185
nssv2762440	deletion	HGDP01029	Sequencing	Read depth	1	17,182

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv2760274	Remapped	Perfect	NW_003315915.1:g.( ?_274922)_(320859_ ?)del	GRCh38.p12	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	274,922	320,859
nssv2762440	Remapped	Perfect	NW_003315915.1:g.( ?_274922)_(320859_ ?)del	GRCh38.p12	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	274,922	320,859
nssv2760274	Remapped	Perfect	NC_000004.12:g.(?_ 34782593)_(3482853 0_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	34,782,593	34,828,530
nssv2762440	Remapped	Perfect	NC_000004.12:g.(?_ 34782593)_(3482853 0_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	34,782,593	34,828,530
nssv2760274	Remapped	Perfect	NW_003315915.1:g.( ?_274922)_(320859_ ?)del	GRCh37.p13	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	274,922	320,859
nssv2762440	Remapped	Perfect	NW_003315915.1:g.( ?_274922)_(320859_ ?)del	GRCh37.p13	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	274,922	320,859
nssv2760274	Remapped	Perfect	NC_000004.11:g.(?_ 34784215)_(3483015 2_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	34,784,215	34,830,152
nssv2762440	Remapped	Perfect	NC_000004.11:g.(?_ 34784215)_(3483015 2_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	34,784,215	34,830,152
nssv2760274	Submitted genomic		NC_000004.10:g.(?_ 34460610)_(3450654 7_?)del	NCBI36 (hg18)		NC_000004.10	Chr4	34,460,610	34,506,547
nssv2762440	Submitted genomic		NC_000004.10:g.(?_ 34460610)_(3450654 7_?)del	NCBI36 (hg18)		NC_000004.10	Chr4	34,460,610	34,506,547

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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