nsv975065
- Organism: Homo sapiens
- Study:nstd82 (Sudmant et al. 2013)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:8
- Validation:Not tested
- Clinical Assertions: No
- Region Size:6,373
- Publication(s):Sudmant et al. 2013
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 346 SVs from 61 studies. See in: genome view
Overlapping variant regions from other studies: 346 SVs from 61 studies. See in: genome view
Overlapping variant regions from other studies: 161 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv975065 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 82,366,011 | 82,372,383 |
| nsv975065 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 84,125,767 | 84,132,139 |
| nsv975065 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 84,115,747 | 84,122,119 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv2758096 | deletion | HGDP01029 | Sequencing | Read depth | 1 | 17,182 |
| nssv2759798 | deletion | HGDP00927 | Sequencing | Read depth | 1 | 17,185 |
| nssv2760581 | deletion | HGDP00521 | Sequencing | Read depth | 1 | 17,171 |
| nssv2760937 | deletion | HGDP00998 | Sequencing | Read depth | 1 | 17,267 |
| nssv2761628 | deletion | HGDP01284 | Sequencing | Read depth | 1 | 17,196 |
| nssv2762399 | deletion | HGDP00778 | Sequencing | Read depth | 1 | 17,185 |
| nssv2762593 | deletion | HGDP01307 | Sequencing | Read depth | 1 | 17,161 |
| nssv2765649 | deletion | HGDP00456 | Sequencing | Read depth | 1 | 17,189 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv2758096 | Remapped | Perfect | NC_000010.11:g.(?_ 82366011)_(8237238 3_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 82,366,011 | 82,372,383 |
| nssv2759798 | Remapped | Perfect | NC_000010.11:g.(?_ 82366011)_(8237238 3_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 82,366,011 | 82,372,383 |
| nssv2760581 | Remapped | Perfect | NC_000010.11:g.(?_ 82366011)_(8237238 3_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 82,366,011 | 82,372,383 |
| nssv2760937 | Remapped | Perfect | NC_000010.11:g.(?_ 82366011)_(8237238 3_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 82,366,011 | 82,372,383 |
| nssv2761628 | Remapped | Perfect | NC_000010.11:g.(?_ 82366011)_(8237238 3_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 82,366,011 | 82,372,383 |
| nssv2762399 | Remapped | Perfect | NC_000010.11:g.(?_ 82366011)_(8237238 3_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 82,366,011 | 82,372,383 |
| nssv2762593 | Remapped | Perfect | NC_000010.11:g.(?_ 82366011)_(8237238 3_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 82,366,011 | 82,372,383 |
| nssv2765649 | Remapped | Perfect | NC_000010.11:g.(?_ 82366011)_(8237238 3_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 82,366,011 | 82,372,383 |
| nssv2758096 | Remapped | Perfect | NC_000010.10:g.(?_ 84125767)_(8413213 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 84,125,767 | 84,132,139 |
| nssv2759798 | Remapped | Perfect | NC_000010.10:g.(?_ 84125767)_(8413213 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 84,125,767 | 84,132,139 |
| nssv2760581 | Remapped | Perfect | NC_000010.10:g.(?_ 84125767)_(8413213 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 84,125,767 | 84,132,139 |
| nssv2760937 | Remapped | Perfect | NC_000010.10:g.(?_ 84125767)_(8413213 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 84,125,767 | 84,132,139 |
| nssv2761628 | Remapped | Perfect | NC_000010.10:g.(?_ 84125767)_(8413213 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 84,125,767 | 84,132,139 |
| nssv2762399 | Remapped | Perfect | NC_000010.10:g.(?_ 84125767)_(8413213 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 84,125,767 | 84,132,139 |
| nssv2762593 | Remapped | Perfect | NC_000010.10:g.(?_ 84125767)_(8413213 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 84,125,767 | 84,132,139 |
| nssv2765649 | Remapped | Perfect | NC_000010.10:g.(?_ 84125767)_(8413213 9_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 84,125,767 | 84,132,139 |
| nssv2758096 | Submitted genomic | NC_000010.9:g.(?_8 4115747)_(84122119 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 84,115,747 | 84,122,119 | ||
| nssv2759798 | Submitted genomic | NC_000010.9:g.(?_8 4115747)_(84122119 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 84,115,747 | 84,122,119 | ||
| nssv2760581 | Submitted genomic | NC_000010.9:g.(?_8 4115747)_(84122119 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 84,115,747 | 84,122,119 | ||
| nssv2760937 | Submitted genomic | NC_000010.9:g.(?_8 4115747)_(84122119 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 84,115,747 | 84,122,119 | ||
| nssv2761628 | Submitted genomic | NC_000010.9:g.(?_8 4115747)_(84122119 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 84,115,747 | 84,122,119 | ||
| nssv2762399 | Submitted genomic | NC_000010.9:g.(?_8 4115747)_(84122119 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 84,115,747 | 84,122,119 | ||
| nssv2762593 | Submitted genomic | NC_000010.9:g.(?_8 4115747)_(84122119 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 84,115,747 | 84,122,119 | ||
| nssv2765649 | Submitted genomic | NC_000010.9:g.(?_8 4115747)_(84122119 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 84,115,747 | 84,122,119 |