nsv973854
- Organisms: Homo sapiens ssp. Denisova, Homo sapiens
- Study:nstd82 (Sudmant et al. 2013)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:10
- Validation:Not tested
- Clinical Assertions: No
- Region Size:6,618
- Publication(s):Sudmant et al. 2013
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1133 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 1135 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 520 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv973854 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 342,390 | 349,007 |
| nsv973854 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 342,390 | 349,007 |
| nsv973854 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 332,390 | 339,007 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv2757318 | deletion | Homo_denisova-Denisova_30x | Sequencing | Read depth | 1 | 19,139 |
| nssv2758179 | deletion | HGDP01029 | Sequencing | Read depth | 1 | 17,182 |
| nssv2758475 | deletion | HGDP00778 | Sequencing | Read depth | 1 | 17,185 |
| nssv2760388 | deletion | HGDP00456 | Sequencing | Read depth | 1 | 17,189 |
| nssv2760864 | deletion | HGDP01307 | Sequencing | Read depth | 1 | 17,161 |
| nssv2762375 | deletion | HGDP00927 | Sequencing | Read depth | 1 | 17,185 |
| nssv2762664 | deletion | HGDP00542 | Sequencing | Read depth | 1 | 17,157 |
| nssv2763577 | deletion | HGDP00665 | Sequencing | Read depth | 1 | 17,185 |
| nssv2765403 | deletion | HGDP01284 | Sequencing | Read depth | 1 | 17,196 |
| nssv2765974 | deletion | HGDP00998 | Sequencing | Read depth | 1 | 17,267 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv2757318 | Remapped | Perfect | NC_000009.12:g.(?_ 342390)_(349007_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 342,390 | 349,007 |
| nssv2758179 | Remapped | Perfect | NC_000009.12:g.(?_ 342390)_(349007_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 342,390 | 349,007 |
| nssv2758475 | Remapped | Perfect | NC_000009.12:g.(?_ 342390)_(349007_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 342,390 | 349,007 |
| nssv2760388 | Remapped | Perfect | NC_000009.12:g.(?_ 342390)_(349007_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 342,390 | 349,007 |
| nssv2760864 | Remapped | Perfect | NC_000009.12:g.(?_ 342390)_(349007_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 342,390 | 349,007 |
| nssv2762375 | Remapped | Perfect | NC_000009.12:g.(?_ 342390)_(349007_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 342,390 | 349,007 |
| nssv2762664 | Remapped | Perfect | NC_000009.12:g.(?_ 342390)_(349007_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 342,390 | 349,007 |
| nssv2763577 | Remapped | Perfect | NC_000009.12:g.(?_ 342390)_(349007_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 342,390 | 349,007 |
| nssv2765403 | Remapped | Perfect | NC_000009.12:g.(?_ 342390)_(349007_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 342,390 | 349,007 |
| nssv2765974 | Remapped | Perfect | NC_000009.12:g.(?_ 342390)_(349007_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 342,390 | 349,007 |
| nssv2757318 | Remapped | Perfect | NC_000009.11:g.(?_ 342390)_(349007_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 342,390 | 349,007 |
| nssv2758179 | Remapped | Perfect | NC_000009.11:g.(?_ 342390)_(349007_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 342,390 | 349,007 |
| nssv2758475 | Remapped | Perfect | NC_000009.11:g.(?_ 342390)_(349007_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 342,390 | 349,007 |
| nssv2760388 | Remapped | Perfect | NC_000009.11:g.(?_ 342390)_(349007_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 342,390 | 349,007 |
| nssv2760864 | Remapped | Perfect | NC_000009.11:g.(?_ 342390)_(349007_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 342,390 | 349,007 |
| nssv2762375 | Remapped | Perfect | NC_000009.11:g.(?_ 342390)_(349007_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 342,390 | 349,007 |
| nssv2762664 | Remapped | Perfect | NC_000009.11:g.(?_ 342390)_(349007_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 342,390 | 349,007 |
| nssv2763577 | Remapped | Perfect | NC_000009.11:g.(?_ 342390)_(349007_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 342,390 | 349,007 |
| nssv2765403 | Remapped | Perfect | NC_000009.11:g.(?_ 342390)_(349007_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 342,390 | 349,007 |
| nssv2765974 | Remapped | Perfect | NC_000009.11:g.(?_ 342390)_(349007_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 342,390 | 349,007 |
| nssv2757318 | Submitted genomic | NC_000009.10:g.(?_ 332390)_(339007_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 332,390 | 339,007 | ||
| nssv2758179 | Submitted genomic | NC_000009.10:g.(?_ 332390)_(339007_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 332,390 | 339,007 | ||
| nssv2758475 | Submitted genomic | NC_000009.10:g.(?_ 332390)_(339007_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 332,390 | 339,007 | ||
| nssv2760388 | Submitted genomic | NC_000009.10:g.(?_ 332390)_(339007_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 332,390 | 339,007 | ||
| nssv2760864 | Submitted genomic | NC_000009.10:g.(?_ 332390)_(339007_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 332,390 | 339,007 | ||
| nssv2762375 | Submitted genomic | NC_000009.10:g.(?_ 332390)_(339007_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 332,390 | 339,007 | ||
| nssv2762664 | Submitted genomic | NC_000009.10:g.(?_ 332390)_(339007_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 332,390 | 339,007 | ||
| nssv2763577 | Submitted genomic | NC_000009.10:g.(?_ 332390)_(339007_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 332,390 | 339,007 | ||
| nssv2765403 | Submitted genomic | NC_000009.10:g.(?_ 332390)_(339007_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 332,390 | 339,007 | ||
| nssv2765974 | Submitted genomic | NC_000009.10:g.(?_ 332390)_(339007_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 332,390 | 339,007 |