nsv966674
- Organisms: Homo sapiens ssp. Denisova, Homo sapiens
- Study:nstd82 (Sudmant et al. 2013)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:9
- Validation:Not tested
- Clinical Assertions: No
- Region Size:6,055
- Publication(s):Sudmant et al. 2013
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 376 SVs from 76 studies. See in: genome view
Overlapping variant regions from other studies: 376 SVs from 76 studies. See in: genome view
Overlapping variant regions from other studies: 225 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv966674 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 165,311,364 | 165,317,418 |
| nsv966674 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 165,724,853 | 165,730,907 |
| nsv966674 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 165,644,843 | 165,650,897 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv2756788 | deletion | HGDP00998 | Sequencing | Read depth | 1 | 17,267 |
| nssv2758842 | deletion | HGDP00456 | Sequencing | Read depth | 0 | 17,189 |
| nssv2761288 | deletion | HGDP00521 | Sequencing | Read depth | 0 | 17,171 |
| nssv2763454 | deletion | HGDP01029 | Sequencing | Read depth | 0 | 17,182 |
| nssv2763742 | deletion | HGDP00665 | Sequencing | Read depth | 1 | 17,185 |
| nssv2764208 | deletion | HGDP00542 | Sequencing | Read depth | 0 | 17,157 |
| nssv2764355 | deletion | HGDP00778 | Sequencing | Read depth | 1 | 17,185 |
| nssv2765582 | deletion | HGDP00927 | Sequencing | Read depth | 1 | 17,185 |
| nssv2766136 | deletion | Homo_denisova-Denisova_30x | Sequencing | Read depth | 0 | 19,139 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv2756788 | Remapped | Perfect | NC_000006.12:g.(?_ 165311364)_(165317 418_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 165,311,364 | 165,317,418 |
| nssv2758842 | Remapped | Perfect | NC_000006.12:g.(?_ 165311364)_(165317 418_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 165,311,364 | 165,317,418 |
| nssv2761288 | Remapped | Perfect | NC_000006.12:g.(?_ 165311364)_(165317 418_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 165,311,364 | 165,317,418 |
| nssv2763454 | Remapped | Perfect | NC_000006.12:g.(?_ 165311364)_(165317 418_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 165,311,364 | 165,317,418 |
| nssv2763742 | Remapped | Perfect | NC_000006.12:g.(?_ 165311364)_(165317 418_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 165,311,364 | 165,317,418 |
| nssv2764208 | Remapped | Perfect | NC_000006.12:g.(?_ 165311364)_(165317 418_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 165,311,364 | 165,317,418 |
| nssv2764355 | Remapped | Perfect | NC_000006.12:g.(?_ 165311364)_(165317 418_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 165,311,364 | 165,317,418 |
| nssv2765582 | Remapped | Perfect | NC_000006.12:g.(?_ 165311364)_(165317 418_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 165,311,364 | 165,317,418 |
| nssv2766136 | Remapped | Perfect | NC_000006.12:g.(?_ 165311364)_(165317 418_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 165,311,364 | 165,317,418 |
| nssv2756788 | Remapped | Perfect | NC_000006.11:g.(?_ 165724853)_(165730 907_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 165,724,853 | 165,730,907 |
| nssv2758842 | Remapped | Perfect | NC_000006.11:g.(?_ 165724853)_(165730 907_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 165,724,853 | 165,730,907 |
| nssv2761288 | Remapped | Perfect | NC_000006.11:g.(?_ 165724853)_(165730 907_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 165,724,853 | 165,730,907 |
| nssv2763454 | Remapped | Perfect | NC_000006.11:g.(?_ 165724853)_(165730 907_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 165,724,853 | 165,730,907 |
| nssv2763742 | Remapped | Perfect | NC_000006.11:g.(?_ 165724853)_(165730 907_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 165,724,853 | 165,730,907 |
| nssv2764208 | Remapped | Perfect | NC_000006.11:g.(?_ 165724853)_(165730 907_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 165,724,853 | 165,730,907 |
| nssv2764355 | Remapped | Perfect | NC_000006.11:g.(?_ 165724853)_(165730 907_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 165,724,853 | 165,730,907 |
| nssv2765582 | Remapped | Perfect | NC_000006.11:g.(?_ 165724853)_(165730 907_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 165,724,853 | 165,730,907 |
| nssv2766136 | Remapped | Perfect | NC_000006.11:g.(?_ 165724853)_(165730 907_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 165,724,853 | 165,730,907 |
| nssv2756788 | Submitted genomic | NC_000006.10:g.(?_ 165644843)_(165650 897_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 165,644,843 | 165,650,897 | ||
| nssv2758842 | Submitted genomic | NC_000006.10:g.(?_ 165644843)_(165650 897_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 165,644,843 | 165,650,897 | ||
| nssv2761288 | Submitted genomic | NC_000006.10:g.(?_ 165644843)_(165650 897_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 165,644,843 | 165,650,897 | ||
| nssv2763454 | Submitted genomic | NC_000006.10:g.(?_ 165644843)_(165650 897_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 165,644,843 | 165,650,897 | ||
| nssv2763742 | Submitted genomic | NC_000006.10:g.(?_ 165644843)_(165650 897_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 165,644,843 | 165,650,897 | ||
| nssv2764208 | Submitted genomic | NC_000006.10:g.(?_ 165644843)_(165650 897_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 165,644,843 | 165,650,897 | ||
| nssv2764355 | Submitted genomic | NC_000006.10:g.(?_ 165644843)_(165650 897_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 165,644,843 | 165,650,897 | ||
| nssv2765582 | Submitted genomic | NC_000006.10:g.(?_ 165644843)_(165650 897_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 165,644,843 | 165,650,897 | ||
| nssv2766136 | Submitted genomic | NC_000006.10:g.(?_ 165644843)_(165650 897_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 165,644,843 | 165,650,897 |