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dbVar

Database of genomic structural variation

nsv964345

Organism: Homo sapiens

Study:nstd82 (Sudmant et al. 2013)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:NCBI36 (hg18)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:7,047

Publication(s):Sudmant et al. 2013

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 496 SVs from 87 studies. See in: genome view

Remapped(Score: Perfect):172,066,601-172,073,647

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv964345	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	172,066,601	172,073,647
nsv964345	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	172,987,752	172,994,798
nsv964345	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000004.10	Chr4	173,224,327	173,231,373

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv2757833	deletion	HGDP00998	Sequencing	Read depth	0	17,267
nssv2760394	deletion	HGDP00521	Sequencing	Read depth	1	17,171
nssv2760855	deletion	HGDP00927	Sequencing	Read depth	0	17,185
nssv2761454	deletion	HGDP01284	Sequencing	Read depth	0	17,196
nssv2762478	deletion	HGDP00778	Sequencing	Read depth	1	17,185
nssv2766461	deletion	HGDP00665	Sequencing	Read depth	1	17,185

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv2757833	Remapped	Perfect	NC_000004.12:g.(?_ 172066601)_(172073 647_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	172,066,601	172,073,647
nssv2760394	Remapped	Perfect	NC_000004.12:g.(?_ 172066601)_(172073 647_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	172,066,601	172,073,647
nssv2760855	Remapped	Perfect	NC_000004.12:g.(?_ 172066601)_(172073 647_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	172,066,601	172,073,647
nssv2761454	Remapped	Perfect	NC_000004.12:g.(?_ 172066601)_(172073 647_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	172,066,601	172,073,647
nssv2762478	Remapped	Perfect	NC_000004.12:g.(?_ 172066601)_(172073 647_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	172,066,601	172,073,647
nssv2766461	Remapped	Perfect	NC_000004.12:g.(?_ 172066601)_(172073 647_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	172,066,601	172,073,647
nssv2757833	Remapped	Perfect	NC_000004.11:g.(?_ 172987752)_(172994 798_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	172,987,752	172,994,798
nssv2760394	Remapped	Perfect	NC_000004.11:g.(?_ 172987752)_(172994 798_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	172,987,752	172,994,798
nssv2760855	Remapped	Perfect	NC_000004.11:g.(?_ 172987752)_(172994 798_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	172,987,752	172,994,798
nssv2761454	Remapped	Perfect	NC_000004.11:g.(?_ 172987752)_(172994 798_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	172,987,752	172,994,798
nssv2762478	Remapped	Perfect	NC_000004.11:g.(?_ 172987752)_(172994 798_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	172,987,752	172,994,798
nssv2766461	Remapped	Perfect	NC_000004.11:g.(?_ 172987752)_(172994 798_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	172,987,752	172,994,798
nssv2757833	Submitted genomic		NC_000004.10:g.(?_ 173224327)_(173231 373_?)del	NCBI36 (hg18)		NC_000004.10	Chr4	173,224,327	173,231,373
nssv2760394	Submitted genomic		NC_000004.10:g.(?_ 173224327)_(173231 373_?)del	NCBI36 (hg18)		NC_000004.10	Chr4	173,224,327	173,231,373
nssv2760855	Submitted genomic		NC_000004.10:g.(?_ 173224327)_(173231 373_?)del	NCBI36 (hg18)		NC_000004.10	Chr4	173,224,327	173,231,373
nssv2761454	Submitted genomic		NC_000004.10:g.(?_ 173224327)_(173231 373_?)del	NCBI36 (hg18)		NC_000004.10	Chr4	173,224,327	173,231,373
nssv2762478	Submitted genomic		NC_000004.10:g.(?_ 173224327)_(173231 373_?)del	NCBI36 (hg18)		NC_000004.10	Chr4	173,224,327	173,231,373
nssv2766461	Submitted genomic		NC_000004.10:g.(?_ 173224327)_(173231 373_?)del	NCBI36 (hg18)		NC_000004.10	Chr4	173,224,327	173,231,373

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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