nsv936211
- Organism: Homo sapiens
- Study:nstd84 (de Ligt et al. 2013)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:12,755
- Publication(s):de Ligt et al. 2013
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1071 SVs from 66 studies. See in: genome view
Overlapping variant regions from other studies: 1071 SVs from 66 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv936211 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 186,960,259 | 186,960,259 | 186,973,013 | 186,973,013 |
| nsv936211 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 187,881,413 | 187,881,413 | 187,894,167 | 187,894,167 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv1661388 | copy number loss | 2 | Oligo aCGH | Probe signal intensity | 0 | 1,450 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1661388 | Remapped | Perfect | NC_000004.12:g.(18 6960259_?)_(?_1869 73013)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 186,960,259 | 186,973,013 |
| nssv1661388 | Submitted genomic | NC_000004.11:g.(18 7881413_?)_(?_1878 94167)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 187,881,413 | 187,894,167 |