nsv6291000
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:4,273,291
- Description:GRCh37/hg19 2q23.3-24.1(chr2:154852961-159126250)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 9311 SVs from 109 studies. See in: genome view
Overlapping variant regions from other studies: 9311 SVs from 109 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv6291000 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 153,996,448 | 158,269,738 |
| nsv6291000 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 154,852,961 | 159,126,250 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv17956615 | copy number loss | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV001827793.1, VCV001340408.1 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17956615 | Remapped | Perfect | NC_000002.12:g.(?_ 153996448)_(158269 738_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 153,996,448 | 158,269,738 |
| nssv17956615 | Submitted genomic | NC_000002.11:g.(?_ 154852961)_(159126 250_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 154,852,961 | 159,126,250 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv17956615 | GRCh37: NC_000002.11:g.(?_154852961)_(159126250_?)del | copy number loss | germline | not provided | Pathogenic | ClinVar | RCV001827793.1, VCV001340408.1 | 1 |