nsv6112720
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:78
- Description:GRCh37/hg19 1p36.13(chr1:17345376-17345453)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 82 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 82 SVs from 29 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv6112720 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 17,018,881 | 17,018,958 |
nsv6112720 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 17,345,376 | 17,345,453 |
Variant Call Information
Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
---|---|---|---|---|---|---|---|---|
nssv17649897 | copy number loss | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV001532114.9, VCV001176539.10 | 1 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv17649897 | Remapped | Perfect | NC_000001.11:g.(?_ 17018881)_(1701895 8_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 17,018,881 | 17,018,958 |
nssv17649897 | Submitted genomic | NC_000001.10:g.(?_ 17345376)_(1734545 3_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 17,345,376 | 17,345,453 |
No validation data were submitted for this variant
Clinical Assertions
Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
---|---|---|---|---|---|---|---|---|
nssv17649897 | GRCh37: NC_000001.10:g.(?_17345376)_(17345453_?)del | copy number loss | germline | not provided | Pathogenic | ClinVar | RCV001532114.9, VCV001176539.10 | 1 |