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dbVar

Database of genomic structural variation

nsv5919857

Organism: Homo sapiens

Study:nstd209 (Almarri et al. 2020)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:2,897

Publication(s):Almarri et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 243 SVs from 39 studies. See in: genome view

Submitted genomic126,270-129,166

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5919857	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000010.11	Chr10	126,270	129,166
nsv5919857	Remapped	Perfect	GRCh37.p13	Primary Assembly	Second Pass	NC_000010.10	Chr10	172,210	175,106
nsv5919857	Remapped	Perfect	GRCh37.p13	PATCHES	First Pass	NW_003571043.1	Chr10\|NW_0 03571043.1	116,270	119,166

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv17357038	deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv17357038	Submitted genomic		NC_000010.11:g.126 270_129166del	GRCh38 (hg38)		NC_000010.11	Chr10	126,270	129,166
nssv17357038	Remapped	Perfect	NW_003571043.1:g.1 16270_119166del	GRCh37.p13	First Pass	NW_003571043.1	Chr10\|NW_0 03571043.1	116,270	119,166
nssv17357038	Remapped	Perfect	NC_000010.10:g.172 210_175106del	GRCh37.p13	Second Pass	NC_000010.10	Chr10	172,210	175,106

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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