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dbVar

Database of genomic structural variation

nsv5897881

Organism: Homo sapiens

Study:nstd209 (Almarri et al. 2020)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:84

Publication(s):Almarri et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 148 SVs from 22 studies. See in: genome view

Submitted genomic88,643,153-88,643,236

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5897881	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000005.10	Chr5	88,643,153	88,643,236
nsv5897881	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	87,938,971	87,939,054

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv17416932	deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv17416932	Submitted genomic		NC_000005.10:g.886 43153_88643236del	GRCh38 (hg38)		NC_000005.10	Chr5	88,643,153	88,643,236
nssv17416932	Remapped	Perfect	NC_000005.9:g.8793 8971_87939054del	GRCh37.p13	First Pass	NC_000005.9	Chr5	87,938,971	87,939,054

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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