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dbVar

Database of genomic structural variation

nsv5673400

Organism: Homo sapiens

Study:nstd102 (Clinical Structural Variants)
Variant Type:copy number variation
Method Type:Multiple
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: Yes
Region Size:602

Description:NC_000001.10:g.(?_197297542)_(197298143_?)del AND multiple conditions
Publication(s):Fahim et al. 2000, Kumaran et al. 2018

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 119 SVs from 22 studies. See in: genome view

Remapped(Score: Perfect):197,328,412-197,329,013

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv5673400	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	197,328,412	197,329,013
nsv5673400	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000001.10	Chr1	197,297,542	197,298,143

Variant Call Information

Variant Call ID	Type	Method	Analysis	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID
nssv17172266	deletion	Multiple	Multiple	LEBER CONGENITAL AMAUROSIS 8; LCA8; Leber congenital amaurosis; Leber congenital amaurosis 8; RETINITIS PIGMENTOSA 12; RP12; Retinitis pigmentosa; Retinitis pigmentosa 12	Likely pathogenic	ClinVar	RCV001378971.5, VCV001067651.5

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv17172266	Remapped	Perfect	NC_000001.11:g.(?_ 197328412)_(197329 013_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	197,328,412	197,329,013
nssv17172266	Submitted genomic		NC_000001.10:g.(?_ 197297542)_(197298 143_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	197,297,542	197,298,143

No validation data were submitted for this variant

Clinical Assertions

Variant Call ID	HGVS	Type	Allele Origin	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID
nssv17172266	GRCh37: NC_000001.10:g.(?_197297542)_(197298143_?)del	deletion	germline	LEBER CONGENITAL AMAUROSIS 8; LCA8; Leber congenital amaurosis; Leber congenital amaurosis 8; RETINITIS PIGMENTOSA 12; RP12; Retinitis pigmentosa; Retinitis pigmentosa 12	Likely pathogenic	ClinVar	RCV001378971.5, VCV001067651.5

No genotype data were submitted for this variant

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