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dbVar

Database of genomic structural variation

nsv5672586

Organism: Homo sapiens

Study:nstd102 (Clinical Structural Variants)
Variant Type:copy number variation
Method Type:Multiple
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: Yes
Region Size:150

Description:NC_000015.9:g.(?_55731650)_(55731799_?)del AND not provided

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 127 SVs from 27 studies. See in: genome view

Remapped(Score: Perfect):55,439,452-55,439,601

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv5672586	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	55,439,452	55,439,601
nsv5672586	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000015.9	Chr15	55,731,650	55,731,799

Variant Call Information

Variant Call ID	Type	Method	Analysis	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID
nssv17172458	deletion	Multiple	Multiple	not provided	Pathogenic	ClinVar	RCV001380719.2, VCV001069012.2

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv17172458	Remapped	Perfect	NC_000015.10:g.(?_ 55439452)_(5543960 1_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	55,439,452	55,439,601
nssv17172458	Submitted genomic		NC_000015.9:g.(?_5 5731650)_(55731799 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	55,731,650	55,731,799

No validation data were submitted for this variant

Clinical Assertions

Variant Call ID	HGVS	Type	Allele Origin	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID
nssv17172458	GRCh37: NC_000015.9:g.(?_55731650)_(55731799_?)del	deletion	germline	not provided	Pathogenic	ClinVar	RCV001380719.2, VCV001069012.2

No genotype data were submitted for this variant

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