nsv561099
- Organism: Homo sapiens
- Study:nstd54 (Cooper et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,169
- Publication(s):Cooper et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 261 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 261 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 169 SVs from 17 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv561099 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000012.12 | Chr12 | 132,510,110 | 132,512,278 |
| nsv561099 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000012.11 | Chr12 | 133,086,696 | 133,088,864 |
| nsv561099 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000012.10 | Chr12 | 131,596,769 | 131,598,937 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv805909 | copy number loss | SNP array | SNP genotyping analysis |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv805909 | Remapped | Perfect | NC_000012.12:g.(?_ 132510110)_(132512 278_?)del | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 132,510,110 | 132,512,278 |
| nssv805909 | Remapped | Perfect | NC_000012.11:g.(?_ 133086696)_(133088 864_?)del | GRCh37.p13 | First Pass | NC_000012.11 | Chr12 | 133,086,696 | 133,088,864 |
| nssv805909 | Submitted genomic | NC_000012.10:g.(?_ 131596769)_(131598 937_?)del | NCBI36 (hg18) | NC_000012.10 | Chr12 | 131,596,769 | 131,598,937 |