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dbVar

Database of genomic structural variation

nsv5564298

Organism: Homo sapiens

Study:nstd102 (Clinical Structural Variants)
Variant Type:copy number variation
Method Type:Multiple
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: Yes
Region Size:37,710

Description:NC_000015.9:g.(?_32964740)_(33002449_?)dup AND Familial colorectal cancer
Publication(s):No authors et al. 2020, No authors et al. 2021

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 196 SVs from 49 studies. See in: genome view

Remapped(Score: Perfect):32,672,539-32,710,248

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv5564298	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	32,672,539	32,710,248
nsv5564298	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000015.9	Chr15	32,964,740	33,002,449

Variant Call Information

Variant Call ID	Type	Method	Analysis	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID
nssv17059237	duplication	Multiple	Multiple	COLORECTAL CANCER; COLORECTAL CANCER; CRC	Uncertain significance	ClinVar	RCV001372415.5, VCV001062672.5

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv17059237	Remapped	Perfect	NC_000015.10:g.(?_ 32672539)_(3271024 8_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	32,672,539	32,710,248
nssv17059237	Submitted genomic		NC_000015.9:g.(?_3 2964740)_(33002449 _?)dup	GRCh37 (hg19)		NC_000015.9	Chr15	32,964,740	33,002,449

No validation data were submitted for this variant

Clinical Assertions

Variant Call ID	HGVS	Type	Allele Origin	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID
nssv17059237	GRCh37: NC_000015.9:g.(?_32964740)_(33002449_?)dup	duplication	germline	COLORECTAL CANCER; COLORECTAL CANCER; CRC	Uncertain significance	ClinVar	RCV001372415.5, VCV001062672.5

No genotype data were submitted for this variant

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