nsv5490020
- Organism: Homo sapiens
- Study:nstd206 (Byrska-Bishop et al. 2022)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:7,800
- Publication(s):Byrska-Bishop et al. 2022
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 209 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 209 SVs from 42 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5490020 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000010.11 | Chr10 | 80,130,965 (-20, +23) | 80,138,764 (-23, +20) | ||
| nsv5490020 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 81,890,721 (-20, +23) | 81,898,520 (-23, +20) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17037106 | duplication | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17037106 | Submitted genomic | NC_000010.11:g.(80 130945_80130988)_( 80138741_80138784) dup | GRCh38 (hg38) | NC_000010.11 | Chr10 | 80,130,965 (-20, +23) | 80,138,764 (-23, +20) | ||
| nssv17037106 | Remapped | Perfect | NC_000010.10:g.(81 890701_81890744)_( 81898497_81898540) dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 81,890,721 (-20, +23) | 81,898,520 (-23, +20) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv17037106 | <0.001 | 2 | 6404 |