nsv5448464
- Organism: Homo sapiens
- Study:nstd206 (Byrska-Bishop et al. 2022)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:148
- Publication(s):Byrska-Bishop et al. 2022
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 100 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 100 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5448464 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000003.12 | Chr3 | 129,389,269 (-20, +23) | 129,389,416 (-20, +20) | ||
| nsv5448464 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 129,108,112 (-20, +23) | 129,108,259 (-20, +20) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16939164 | deletion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16939164 | Submitted genomic | NC_000003.12:g.(12 9389249_129389292) _(129389396_129389 436)del | GRCh38 (hg38) | NC_000003.12 | Chr3 | 129,389,269 (-20, +23) | 129,389,416 (-20, +20) | ||
| nssv16939164 | Remapped | Perfect | NC_000003.11:g.(12 9108092_129108135) _(129108239_129108 279)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 129,108,112 (-20, +23) | 129,108,259 (-20, +20) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16939164 | <0.001 | 3 | 6404 |