nsv5381193
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:287,356
- Description:NC_000019.9:g.(?_10912954)_(11200309_?)dup AND Familial hypercholesterolemia
- Publication(s):Youngblom et al. 2014
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 804 SVs from 65 studies. See in: genome view
Overlapping variant regions from other studies: 804 SVs from 65 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv5381193 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 10,802,278 | 11,089,633 |
nsv5381193 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000019.9 | Chr19 | 10,912,954 | 11,200,309 |
Variant Call Information
Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
---|---|---|---|---|---|---|---|
nssv16867244 | duplication | Multiple | Multiple | Familial Hypercholesterolemia; Familial hypercholesterolemia; Hypercholesterolemia, familial | Uncertain significance | ClinVar | RCV001345083.2, VCV001041299.2 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv16867244 | Remapped | Perfect | NC_000019.10:g.(?_ 10802278)_(1108963 3_?)dup | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 10,802,278 | 11,089,633 |
nssv16867244 | Submitted genomic | NC_000019.9:g.(?_1 0912954)_(11200309 _?)dup | GRCh37 (hg19) | NC_000019.9 | Chr19 | 10,912,954 | 11,200,309 |
No validation data were submitted for this variant
Clinical Assertions
Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
---|---|---|---|---|---|---|---|
nssv16867244 | GRCh37: NC_000019.9:g.(?_10912954)_(11200309_?)dup | duplication | germline | Familial Hypercholesterolemia; Familial hypercholesterolemia; Hypercholesterolemia, familial | Uncertain significance | ClinVar | RCV001345083.2, VCV001041299.2 |