nsv5378539
- Organism: Homo sapiens
- Study:nstd200 (Abel et al. 2020)
- Variant Type:translocation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Abel et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 245 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 176 SVs from 33 studies. See in: genome view
Overlapping variant regions from other studies: 247 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 178 SVs from 33 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv5378539 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000001.11 | Chr1 | 108,829,115 | 108,829,115 | - | ||
| nsv5378539 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000001.11 | Chr1 | 108,829,698 | 108,829,698 | - | ||
| nsv5378539 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 109,371,737 | 109,371,737 | - |
| nsv5378539 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 109,372,320 | 109,372,320 | - |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16436724 | intrachromosomal translocation | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|
| nssv16436724 | Submitted genomic | GRCh38 (hg38) | NC_000001.11 | Chr1 | 108,829,115 | 108,829,115 | - | ||
| nssv16436724 | Submitted genomic | GRCh38 (hg38) | NC_000001.11 | Chr1 | 108,829,698 | 108,829,698 | - | ||
| nssv16436724 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 109,371,737 | 109,371,737 | - |
| nssv16436724 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 109,372,320 | 109,372,320 | - |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16436724 | <0.001 | 3 | 29246 |