nsv5376179
- Organism: Homo sapiens
- Study:nstd200 (Abel et al. 2020)
- Variant Type:translocation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Abel et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 424 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 424 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 424 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 424 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 7 SVs from 4 studies. See in: genome view
Overlapping variant regions from other studies: 7 SVs from 4 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv5376179 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000023.11 | ChrX | 47,078,371 | 47,078,371 | + | ||
| nsv5376179 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000023.11 | ChrX | 47,078,481 | 47,078,481 | + | ||
| nsv5376179 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000023.10 | ChrX | 46,937,770 | 46,937,770 | + |
| nsv5376179 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000023.10 | ChrX | 46,937,880 | 46,937,880 | + |
| nsv5376179 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004166866.1 | ChrX|NW_00 4166866.1 | 327,932 | 327,932 | + |
| nsv5376179 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004166866.1 | ChrX|NW_00 4166866.1 | 328,042 | 328,042 | + |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16590739 | intrachromosomal translocation | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|
| nssv16590739 | Submitted genomic | GRCh38 (hg38) | NC_000023.11 | ChrX | 47,078,371 | 47,078,371 | + | ||
| nssv16590739 | Submitted genomic | GRCh38 (hg38) | NC_000023.11 | ChrX | 47,078,481 | 47,078,481 | + | ||
| nssv16590739 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_004166866.1 | ChrX|NW_00 4166866.1 | 327,932 | 327,932 | + |
| nssv16590739 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_004166866.1 | ChrX|NW_00 4166866.1 | 328,042 | 328,042 | + |
| nssv16590739 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000023.10 | ChrX | 46,937,770 | 46,937,770 | + |
| nssv16590739 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000023.10 | ChrX | 46,937,880 | 46,937,880 | + |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16590739 | <0.001 | 17 | 29246 |