nsv5307303
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,339
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 225 SVs from 27 studies. See in: genome view
Overlapping variant regions from other studies: 225 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5307303 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000013.11 | Chr13 | 76,988,113 (-21, +247) | 76,990,451 (-169, +29) | ||
| nsv5307303 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000013.10 | Chr13 | 77,562,248 (-21, +247) | 77,564,586 (-169, +29) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16750591 | deletion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16750591 | Submitted genomic | NC_000013.11:g.(76 988092_76988360)_( 76990282_76990480) del | GRCh38.p13 | NC_000013.11 | Chr13 | 76,988,113 (-21, +247) | 76,990,451 (-169, +29) | ||
| nssv16750591 | Remapped | Perfect | NC_000013.10:g.(77 562227_77562495)_( 77564417_77564615) del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 77,562,248 (-21, +247) | 77,564,586 (-169, +29) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16750591 | <0.001 |