nsv5298141
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:610,510
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2695 SVs from 105 studies. See in: genome view
Overlapping variant regions from other studies: 2697 SVs from 105 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5298141 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000001.11 | Chr1 | 108,723,194 (-3, +1) | 109,333,703 (-2, +1) | ||
| nsv5298141 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 109,265,816 (-3, +1) | 109,876,325 (-2, +1) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16743982 | duplication | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16743982 | Submitted genomic | NC_000001.11:g.(10 8723191_108723195) _(109333701_109333 704)dup | GRCh38.p13 | NC_000001.11 | Chr1 | 108,723,194 (-3, +1) | 109,333,703 (-2, +1) | ||
| nssv16743982 | Remapped | Perfect | NC_000001.10:g.(10 9265813_109265817) _(109876323_109876 326)dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 109,265,816 (-3, +1) | 109,876,325 (-2, +1) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16743982 | <0.001 |