nsv5286783
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:11,073
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 231 SVs from 46 studies. See in: genome view
Overlapping variant regions from other studies: 231 SVs from 46 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5286783 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000001.11 | Chr1 | 86,562,531 (-3, +3) | 86,573,603 (-4, +1) | ||
| nsv5286783 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 87,028,214 (-3, +3) | 87,039,286 (-4, +1) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16743322 | deletion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16743322 | Submitted genomic | NC_000001.11:g.(86 562528_86562534)_( 86573599_86573604) del | GRCh38.p13 | NC_000001.11 | Chr1 | 86,562,531 (-3, +3) | 86,573,603 (-4, +1) | ||
| nssv16743322 | Remapped | Perfect | NC_000001.10:g.(87 028211_87028217)_( 87039282_87039287) del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 87,028,214 (-3, +3) | 87,039,286 (-4, +1) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16743322 | 0.002 |