nsv5286776
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:10,909
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 227 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 240 SVs from 60 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5286776 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000001.11 | Chr1 | 152,676,228 (-250, +29) | 152,687,136 (-19, +276) | ||
| nsv5286776 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 152,648,704 (-250, +29) | 152,659,612 (-19, +276) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16739279 | duplication | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16739279 | Submitted genomic | NC_000001.11:g.(15 2675978_152676257) _(152687117_152687 412)dup | GRCh38.p13 | NC_000001.11 | Chr1 | 152,676,228 (-250, +29) | 152,687,136 (-19, +276) | ||
| nssv16739279 | Remapped | Perfect | NC_000001.10:g.(15 2648454_152648733) _(152659593_152659 888)dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 152,648,704 (-250, +29) | 152,659,612 (-19, +276) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16739279 | <0.001 |