Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv5215508

Organism: Homo sapiens

Study:nstd204 (Chen et al. 2021)
Variant Type:mobile element deletion
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:322

Publication(s):Chen et al. 2021

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 130 SVs from 32 studies. See in: genome view

Submitted genomic34,966,862-34,967,200

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5215508	Submitted genomic		GRCh38.p13	Primary Assembly		NC_000015.10	Chr15	34,966,871 (-9, +8)	34,967,192 (-9, +8)
nsv5215508	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000015.9	Chr15	35,259,072 (-9, +8)	35,259,393 (-9, +8)

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16748206	alu deletion	Sequencing	Split read and paired-end mapping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16748206	Submitted genomic		NC_000015.10:g.(34 966862_34966879)_( 34967183_34967200) del	GRCh38.p13		NC_000015.10	Chr15	34,966,871 (-9, +8)	34,967,192 (-9, +8)
nssv16748206	Remapped	Perfect	NC_000015.9:g.(352 59063_35259080)_(3 5259384_35259401)d el	GRCh37.p13	First Pass	NC_000015.9	Chr15	35,259,072 (-9, +8)	35,259,393 (-9, +8)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)
nssv16748206	<0.001

You are here: NCBI