nsv5200382
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:524,647
- Description:
GRCh37/hg19 16p11.2(chr16:29673954-30198600) AND Autism - Publication(s):Miller et al. 2010
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1863 SVs from 91 studies. See in: genome view
Overlapping variant regions from other studies: 1863 SVs from 91 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv5200382 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 29,662,633 | 30,187,279 |
nsv5200382 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000016.9 | Chr16 | 29,673,954 | 30,198,600 |
Variant Call Information
Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
---|---|---|---|---|---|---|---|
nssv16736649 | copy number gain | Multiple | Multiple | AUTISM; Autism; Autistic Disorder; Autistic disorder of childhood onset | Pathogenic | ClinVar | RCV001291991.1, VCV000997089.1 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv16736649 | Remapped | Perfect | NC_000016.10:g.(?_ 29662633)_(3018727 9_?)dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 29,662,633 | 30,187,279 |
nssv16736649 | Submitted genomic | NC_000016.9:g.(?_2 9673954)_(30198600 _?)dup | GRCh37 (hg19) | NC_000016.9 | Chr16 | 29,673,954 | 30,198,600 |
No validation data were submitted for this variant
Clinical Assertions
Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
---|---|---|---|---|---|---|---|
nssv16736649 | GRCh37: NC_000016.9:g.(?_29673954)_(30198600_?)dup | copy number gain | paternal | AUTISM; Autism; Autistic Disorder; Autistic disorder of childhood onset | Pathogenic | ClinVar | RCV001291991.1, VCV000997089.1 |