nsv519570
- Organism: Homo sapiens
- Study:nstd21 (Shaikh et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:11
- Validation:Not tested
- Clinical Assertions: No
- Region Size:66,787
- Publication(s):Shaikh et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 319 SVs from 56 studies. See in: genome view
Overlapping variant regions from other studies: 319 SVs from 56 studies. See in: genome view
Overlapping variant regions from other studies: 1 SVs from 1 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv519570 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 43,539,609 | 43,606,395 |
| nsv519570 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 44,005,280 | 44,072,066 |
| nsv519570 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000001.8 | Chr1 | 43,674,373 | 43,741,159 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Zygosity |
|---|---|---|---|---|
| nssv656910 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv657034 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv662069 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv673331 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv682477 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv705110 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv703017 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv660985 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv674625 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv675620 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv686669 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv656910 | Remapped | Perfect | NC_000001.11:g.(?_ 43539609)_(4360639 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 43,539,609 | 43,606,395 |
| nssv657034 | Remapped | Perfect | NC_000001.11:g.(?_ 43539609)_(4360639 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 43,539,609 | 43,606,395 |
| nssv662069 | Remapped | Perfect | NC_000001.11:g.(?_ 43539609)_(4360639 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 43,539,609 | 43,606,395 |
| nssv673331 | Remapped | Perfect | NC_000001.11:g.(?_ 43539609)_(4360639 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 43,539,609 | 43,606,395 |
| nssv682477 | Remapped | Perfect | NC_000001.11:g.(?_ 43539609)_(4360639 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 43,539,609 | 43,606,395 |
| nssv705110 | Remapped | Perfect | NC_000001.11:g.(?_ 43540257)_(4357316 6_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 43,540,257 | 43,573,166 |
| nssv703017 | Remapped | Perfect | NC_000001.11:g.(?_ 43540257)_(4358024 8_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 43,540,257 | 43,580,248 |
| nssv660985 | Remapped | Perfect | NC_000001.11:g.(?_ 43540257)_(4360639 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 43,540,257 | 43,606,395 |
| nssv674625 | Remapped | Perfect | NC_000001.11:g.(?_ 43540257)_(4360639 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 43,540,257 | 43,606,395 |
| nssv675620 | Remapped | Perfect | NC_000001.11:g.(?_ 43544900)_(4360218 8_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 43,544,900 | 43,602,188 |
| nssv686669 | Remapped | Perfect | NC_000001.11:g.(?_ 43544900)_(4360639 5_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 43,544,900 | 43,606,395 |
| nssv656910 | Remapped | Perfect | NC_000001.10:g.(?_ 44005280)_(4407206 6_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 44,005,280 | 44,072,066 |
| nssv657034 | Remapped | Perfect | NC_000001.10:g.(?_ 44005280)_(4407206 6_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 44,005,280 | 44,072,066 |
| nssv662069 | Remapped | Perfect | NC_000001.10:g.(?_ 44005280)_(4407206 6_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 44,005,280 | 44,072,066 |
| nssv673331 | Remapped | Perfect | NC_000001.10:g.(?_ 44005280)_(4407206 6_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 44,005,280 | 44,072,066 |
| nssv682477 | Remapped | Perfect | NC_000001.10:g.(?_ 44005280)_(4407206 6_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 44,005,280 | 44,072,066 |
| nssv705110 | Remapped | Perfect | NC_000001.10:g.(?_ 44005928)_(4403883 7_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 44,005,928 | 44,038,837 |
| nssv703017 | Remapped | Perfect | NC_000001.10:g.(?_ 44005928)_(4404591 9_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 44,005,928 | 44,045,919 |
| nssv660985 | Remapped | Perfect | NC_000001.10:g.(?_ 44005928)_(4407206 6_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 44,005,928 | 44,072,066 |
| nssv674625 | Remapped | Perfect | NC_000001.10:g.(?_ 44005928)_(4407206 6_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 44,005,928 | 44,072,066 |
| nssv675620 | Remapped | Perfect | NC_000001.10:g.(?_ 44010571)_(4406785 9_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 44,010,571 | 44,067,859 |
| nssv686669 | Remapped | Perfect | NC_000001.10:g.(?_ 44010571)_(4407206 6_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 44,010,571 | 44,072,066 |
| nssv656910 | Submitted genomic | NC_000001.8:g.(?_4 3674373)_(43741159 _?)del | NCBI35 (hg17) | NC_000001.8 | Chr1 | 43,674,373 | 43,741,159 | ||
| nssv657034 | Submitted genomic | NC_000001.8:g.(?_4 3674373)_(43741159 _?)del | NCBI35 (hg17) | NC_000001.8 | Chr1 | 43,674,373 | 43,741,159 | ||
| nssv662069 | Submitted genomic | NC_000001.8:g.(?_4 3674373)_(43741159 _?)del | NCBI35 (hg17) | NC_000001.8 | Chr1 | 43,674,373 | 43,741,159 | ||
| nssv673331 | Submitted genomic | NC_000001.8:g.(?_4 3674373)_(43741159 _?)del | NCBI35 (hg17) | NC_000001.8 | Chr1 | 43,674,373 | 43,741,159 | ||
| nssv682477 | Submitted genomic | NC_000001.8:g.(?_4 3674373)_(43741159 _?)del | NCBI35 (hg17) | NC_000001.8 | Chr1 | 43,674,373 | 43,741,159 | ||
| nssv705110 | Submitted genomic | NC_000001.8:g.(?_4 3675021)_(43707930 _?)del | NCBI35 (hg17) | NC_000001.8 | Chr1 | 43,675,021 | 43,707,930 | ||
| nssv703017 | Submitted genomic | NC_000001.8:g.(?_4 3675021)_(43715012 _?)del | NCBI35 (hg17) | NC_000001.8 | Chr1 | 43,675,021 | 43,715,012 | ||
| nssv660985 | Submitted genomic | NC_000001.8:g.(?_4 3675021)_(43741159 _?)del | NCBI35 (hg17) | NC_000001.8 | Chr1 | 43,675,021 | 43,741,159 | ||
| nssv674625 | Submitted genomic | NC_000001.8:g.(?_4 3675021)_(43741159 _?)del | NCBI35 (hg17) | NC_000001.8 | Chr1 | 43,675,021 | 43,741,159 | ||
| nssv675620 | Submitted genomic | NC_000001.8:g.(?_4 3679664)_(43736952 _?)del | NCBI35 (hg17) | NC_000001.8 | Chr1 | 43,679,664 | 43,736,952 | ||
| nssv686669 | Submitted genomic | NC_000001.8:g.(?_4 3679664)_(43741159 _?)del | NCBI35 (hg17) | NC_000001.8 | Chr1 | 43,679,664 | 43,741,159 |