nsv517643
- Organism: Homo sapiens
- Study:nstd21 (Shaikh et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:22
- Validation:Not tested
- Clinical Assertions: No
- Region Size:42,573
- Publication(s):Shaikh et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 704 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 704 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 9 SVs from 5 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv517643 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 88,713,767 | 88,756,339 |
| nsv517643 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000016.9 | Chr16 | 88,780,175 | 88,822,747 |
| nsv517643 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000016.8 | Chr16 | 87,307,676 | 87,350,248 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Zygosity |
|---|---|---|---|---|
| nssv691871 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv669932 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv691475 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv675166 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv689646 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv692965 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv652657 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv663521 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv665584 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv668671 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv681715 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv687496 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv688908 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv690237 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv672984 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv660783 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv664140 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv669113 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv673024 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv677150 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv677918 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv683672 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv691871 | Remapped | Perfect | NC_000016.10:g.(?_ 88713767)_(8873877 5_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 88,713,767 | 88,738,775 |
| nssv669932 | Remapped | Perfect | NC_000016.10:g.(?_ 88713767)_(8874079 7_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 88,713,767 | 88,740,797 |
| nssv691475 | Remapped | Perfect | NC_000016.10:g.(?_ 88713767)_(8874079 7_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 88,713,767 | 88,740,797 |
| nssv675166 | Remapped | Perfect | NC_000016.10:g.(?_ 88713767)_(8875599 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 88,713,767 | 88,755,993 |
| nssv689646 | Remapped | Perfect | NC_000016.10:g.(?_ 88713767)_(8875599 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 88,713,767 | 88,755,993 |
| nssv692965 | Remapped | Perfect | NC_000016.10:g.(?_ 88713767)_(8875633 9_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 88,713,767 | 88,756,339 |
| nssv652657 | Remapped | Perfect | NC_000016.10:g.(?_ 88714632)_(8872750 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 88,714,632 | 88,727,502 |
| nssv663521 | Remapped | Perfect | NC_000016.10:g.(?_ 88714632)_(8872750 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 88,714,632 | 88,727,502 |
| nssv665584 | Remapped | Perfect | NC_000016.10:g.(?_ 88714632)_(8872750 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 88,714,632 | 88,727,502 |
| nssv668671 | Remapped | Perfect | NC_000016.10:g.(?_ 88714632)_(8872750 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 88,714,632 | 88,727,502 |
| nssv681715 | Remapped | Perfect | NC_000016.10:g.(?_ 88714632)_(8872750 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 88,714,632 | 88,727,502 |
| nssv687496 | Remapped | Perfect | NC_000016.10:g.(?_ 88714632)_(8872750 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 88,714,632 | 88,727,502 |
| nssv688908 | Remapped | Perfect | NC_000016.10:g.(?_ 88714632)_(8872750 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 88,714,632 | 88,727,502 |
| nssv690237 | Remapped | Perfect | NC_000016.10:g.(?_ 88714632)_(8872750 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 88,714,632 | 88,727,502 |
| nssv672984 | Remapped | Perfect | NC_000016.10:g.(?_ 88714632)_(8874079 7_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 88,714,632 | 88,740,797 |
| nssv660783 | Remapped | Perfect | NC_000016.10:g.(?_ 88716268)_(8872750 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 88,716,268 | 88,727,502 |
| nssv664140 | Remapped | Perfect | NC_000016.10:g.(?_ 88716268)_(8872750 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 88,716,268 | 88,727,502 |
| nssv669113 | Remapped | Perfect | NC_000016.10:g.(?_ 88716268)_(8872750 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 88,716,268 | 88,727,502 |
| nssv673024 | Remapped | Perfect | NC_000016.10:g.(?_ 88716268)_(8872750 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 88,716,268 | 88,727,502 |
| nssv677150 | Remapped | Perfect | NC_000016.10:g.(?_ 88716268)_(8872750 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 88,716,268 | 88,727,502 |
| nssv677918 | Remapped | Perfect | NC_000016.10:g.(?_ 88716268)_(8872750 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 88,716,268 | 88,727,502 |
| nssv683672 | Remapped | Perfect | NC_000016.10:g.(?_ 88716268)_(8872750 2_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 88,716,268 | 88,727,502 |
| nssv691871 | Remapped | Perfect | NC_000016.9:g.(?_8 8780175)_(88805183 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 88,780,175 | 88,805,183 |
| nssv669932 | Remapped | Perfect | NC_000016.9:g.(?_8 8780175)_(88807205 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 88,780,175 | 88,807,205 |
| nssv691475 | Remapped | Perfect | NC_000016.9:g.(?_8 8780175)_(88807205 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 88,780,175 | 88,807,205 |
| nssv675166 | Remapped | Perfect | NC_000016.9:g.(?_8 8780175)_(88822401 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 88,780,175 | 88,822,401 |
| nssv689646 | Remapped | Perfect | NC_000016.9:g.(?_8 8780175)_(88822401 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 88,780,175 | 88,822,401 |
| nssv692965 | Remapped | Perfect | NC_000016.9:g.(?_8 8780175)_(88822747 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 88,780,175 | 88,822,747 |
| nssv652657 | Remapped | Perfect | NC_000016.9:g.(?_8 8781040)_(88793910 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 88,781,040 | 88,793,910 |
| nssv663521 | Remapped | Perfect | NC_000016.9:g.(?_8 8781040)_(88793910 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 88,781,040 | 88,793,910 |
| nssv665584 | Remapped | Perfect | NC_000016.9:g.(?_8 8781040)_(88793910 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 88,781,040 | 88,793,910 |
| nssv668671 | Remapped | Perfect | NC_000016.9:g.(?_8 8781040)_(88793910 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 88,781,040 | 88,793,910 |
| nssv681715 | Remapped | Perfect | NC_000016.9:g.(?_8 8781040)_(88793910 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 88,781,040 | 88,793,910 |
| nssv687496 | Remapped | Perfect | NC_000016.9:g.(?_8 8781040)_(88793910 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 88,781,040 | 88,793,910 |
| nssv688908 | Remapped | Perfect | NC_000016.9:g.(?_8 8781040)_(88793910 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 88,781,040 | 88,793,910 |
| nssv690237 | Remapped | Perfect | NC_000016.9:g.(?_8 8781040)_(88793910 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 88,781,040 | 88,793,910 |
| nssv672984 | Remapped | Perfect | NC_000016.9:g.(?_8 8781040)_(88807205 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 88,781,040 | 88,807,205 |
| nssv660783 | Remapped | Perfect | NC_000016.9:g.(?_8 8782676)_(88793910 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 88,782,676 | 88,793,910 |
| nssv664140 | Remapped | Perfect | NC_000016.9:g.(?_8 8782676)_(88793910 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 88,782,676 | 88,793,910 |
| nssv669113 | Remapped | Perfect | NC_000016.9:g.(?_8 8782676)_(88793910 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 88,782,676 | 88,793,910 |
| nssv673024 | Remapped | Perfect | NC_000016.9:g.(?_8 8782676)_(88793910 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 88,782,676 | 88,793,910 |
| nssv677150 | Remapped | Perfect | NC_000016.9:g.(?_8 8782676)_(88793910 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 88,782,676 | 88,793,910 |
| nssv677918 | Remapped | Perfect | NC_000016.9:g.(?_8 8782676)_(88793910 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 88,782,676 | 88,793,910 |
| nssv683672 | Remapped | Perfect | NC_000016.9:g.(?_8 8782676)_(88793910 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 88,782,676 | 88,793,910 |
| nssv691871 | Submitted genomic | NC_000016.8:g.(?_8 7307676)_(87332684 _?)del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 87,307,676 | 87,332,684 | ||
| nssv669932 | Submitted genomic | NC_000016.8:g.(?_8 7307676)_(87334706 _?)del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 87,307,676 | 87,334,706 | ||
| nssv691475 | Submitted genomic | NC_000016.8:g.(?_8 7307676)_(87334706 _?)del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 87,307,676 | 87,334,706 | ||
| nssv675166 | Submitted genomic | NC_000016.8:g.(?_8 7307676)_(87349902 _?)del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 87,307,676 | 87,349,902 | ||
| nssv689646 | Submitted genomic | NC_000016.8:g.(?_8 7307676)_(87349902 _?)del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 87,307,676 | 87,349,902 | ||
| nssv692965 | Submitted genomic | NC_000016.8:g.(?_8 7307676)_(87350248 _?)del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 87,307,676 | 87,350,248 | ||
| nssv652657 | Submitted genomic | NC_000016.8:g.(?_8 7308541)_(87321411 _?)del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 87,308,541 | 87,321,411 | ||
| nssv663521 | Submitted genomic | NC_000016.8:g.(?_8 7308541)_(87321411 _?)del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 87,308,541 | 87,321,411 | ||
| nssv665584 | Submitted genomic | NC_000016.8:g.(?_8 7308541)_(87321411 _?)del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 87,308,541 | 87,321,411 | ||
| nssv668671 | Submitted genomic | NC_000016.8:g.(?_8 7308541)_(87321411 _?)del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 87,308,541 | 87,321,411 | ||
| nssv681715 | Submitted genomic | NC_000016.8:g.(?_8 7308541)_(87321411 _?)del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 87,308,541 | 87,321,411 | ||
| nssv687496 | Submitted genomic | NC_000016.8:g.(?_8 7308541)_(87321411 _?)del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 87,308,541 | 87,321,411 | ||
| nssv688908 | Submitted genomic | NC_000016.8:g.(?_8 7308541)_(87321411 _?)del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 87,308,541 | 87,321,411 | ||
| nssv690237 | Submitted genomic | NC_000016.8:g.(?_8 7308541)_(87321411 _?)del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 87,308,541 | 87,321,411 | ||
| nssv672984 | Submitted genomic | NC_000016.8:g.(?_8 7308541)_(87334706 _?)del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 87,308,541 | 87,334,706 | ||
| nssv660783 | Submitted genomic | NC_000016.8:g.(?_8 7310177)_(87321411 _?)del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 87,310,177 | 87,321,411 | ||
| nssv664140 | Submitted genomic | NC_000016.8:g.(?_8 7310177)_(87321411 _?)del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 87,310,177 | 87,321,411 | ||
| nssv669113 | Submitted genomic | NC_000016.8:g.(?_8 7310177)_(87321411 _?)del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 87,310,177 | 87,321,411 | ||
| nssv673024 | Submitted genomic | NC_000016.8:g.(?_8 7310177)_(87321411 _?)del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 87,310,177 | 87,321,411 | ||
| nssv677150 | Submitted genomic | NC_000016.8:g.(?_8 7310177)_(87321411 _?)del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 87,310,177 | 87,321,411 | ||
| nssv677918 | Submitted genomic | NC_000016.8:g.(?_8 7310177)_(87321411 _?)del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 87,310,177 | 87,321,411 | ||
| nssv683672 | Submitted genomic | NC_000016.8:g.(?_8 7310177)_(87321411 _?)del | NCBI35 (hg17) | NC_000016.8 | Chr16 | 87,310,177 | 87,321,411 |