nsv4836903
- Organism: Homo sapiens
- Study:nstd200 (Abel et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:8,029
- Publication(s):Abel et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 164 SVs from 48 studies. See in: genome view
Overlapping variant regions from other studies: 65 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 65 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 164 SVs from 48 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4836903 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 7,835,243 | 7,843,266 |
| nsv4836903 | Remapped | Good | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187583.1 | Chr11|NT_1 87583.1 | 56,111 | 64,139 |
| nsv4836903 | Remapped | Perfect | GRCh38.p12 | PATCHES | Second Pass | NW_011332695.1 | Chr11|NW_0 11332695.1 | 66,237 | 74,260 |
| nsv4836903 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 7,856,790 | 7,864,813 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16356129 | deletion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16356129 | Remapped | Good | NT_187583.1:g.5611 1_64139del | GRCh38.p12 | Second Pass | NT_187583.1 | Chr11|NT_1 87583.1 | 56,111 | 64,139 |
| nssv16356129 | Remapped | Perfect | NW_011332695.1:g.6 6237_74260del | GRCh38.p12 | Second Pass | NW_011332695.1 | Chr11|NW_0 11332695.1 | 66,237 | 74,260 |
| nssv16356129 | Remapped | Perfect | NC_000011.10:g.783 5243_7843266del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 7,835,243 | 7,843,266 |
| nssv16356129 | Submitted genomic | NC_000011.9:g.7856 790_7864813del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 7,856,790 | 7,864,813 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16356129 | <0.001 | 1 | 16834 |