nsv471620
- Organism: Homo sapiens
- Study:nstd32 (Sharp et al. 2005)
- Variant Type:copy number variation
- Method Type:BAC aCGH
- Submitted on:NCBI34 (hg16)
- Variant Calls:13
- Validation:Not tested
- Clinical Assertions: No
- Region Size:150,673
- Publication(s):Sharp et al. 2005
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 531 SVs from 68 studies. See in: genome view
Overlapping variant regions from other studies: 252 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 531 SVs from 68 studies. See in: genome view
Overlapping variant regions from other studies: 1 SVs from 1 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv471620 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 84,831,663 | 84,982,335 |
| nsv471620 | Remapped | Good | GRCh38.p12 | PATCHES | Second Pass | NW_018654711.1 | Chr3|NW_01 8654711.1 | 31,696 | 175,849 |
| nsv471620 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 84,880,814 | 85,031,486 |
| nsv471620 | Submitted genomic | NCBI34 (hg16) | Primary Assembly | NC_000003.8 | Chr3 | 84,801,715 | 84,952,387 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv550754 | copy number loss | GM10469A | BAC aCGH | Probe signal intensity | 56 |
| nssv550755 | copy number loss | GM10471 | BAC aCGH | Probe signal intensity | 51 |
| nssv550756 | copy number loss | GM10473A | BAC aCGH | Probe signal intensity | 44 |
| nssv550757 | copy number loss | GM10492A | BAC aCGH | Probe signal intensity | 47 |
| nssv550758 | copy number loss | GM10494A | BAC aCGH | Probe signal intensity | 55 |
| nssv550759 | copy number loss | GM10496A | BAC aCGH | Probe signal intensity | 59 |
| nssv550760 | copy number loss | GM15726 | BAC aCGH | Probe signal intensity | 41 |
| nssv550761 | copy number loss | JK1051A | BAC aCGH | Probe signal intensity | 53 |
| nssv550762 | copy number loss | JK1058B | BAC aCGH | Probe signal intensity | 61 |
| nssv550763 | copy number loss | JK1061 | BAC aCGH | Probe signal intensity | 51 |
| nssv550764 | copy number loss | JK1688B | BAC aCGH | Probe signal intensity | 53 |
| nssv550765 | copy number loss | JK776 | BAC aCGH | Probe signal intensity | 50 |
| nssv550766 | copy number loss | P86GA | BAC aCGH | Probe signal intensity | 50 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv550754 | Remapped | Good | NW_018654711.1:g.( ?_31696)_(175849_? )del | GRCh38.p12 | Second Pass | NW_018654711.1 | Chr3|NW_01 8654711.1 | 31,696 | 175,849 |
| nssv550755 | Remapped | Good | NW_018654711.1:g.( ?_31696)_(175849_? )del | GRCh38.p12 | Second Pass | NW_018654711.1 | Chr3|NW_01 8654711.1 | 31,696 | 175,849 |
| nssv550756 | Remapped | Good | NW_018654711.1:g.( ?_31696)_(175849_? )del | GRCh38.p12 | Second Pass | NW_018654711.1 | Chr3|NW_01 8654711.1 | 31,696 | 175,849 |
| nssv550757 | Remapped | Good | NW_018654711.1:g.( ?_31696)_(175849_? )del | GRCh38.p12 | Second Pass | NW_018654711.1 | Chr3|NW_01 8654711.1 | 31,696 | 175,849 |
| nssv550758 | Remapped | Good | NW_018654711.1:g.( ?_31696)_(175849_? )del | GRCh38.p12 | Second Pass | NW_018654711.1 | Chr3|NW_01 8654711.1 | 31,696 | 175,849 |
| nssv550759 | Remapped | Good | NW_018654711.1:g.( ?_31696)_(175849_? )del | GRCh38.p12 | Second Pass | NW_018654711.1 | Chr3|NW_01 8654711.1 | 31,696 | 175,849 |
| nssv550760 | Remapped | Good | NW_018654711.1:g.( ?_31696)_(175849_? )del | GRCh38.p12 | Second Pass | NW_018654711.1 | Chr3|NW_01 8654711.1 | 31,696 | 175,849 |
| nssv550761 | Remapped | Good | NW_018654711.1:g.( ?_31696)_(175849_? )del | GRCh38.p12 | Second Pass | NW_018654711.1 | Chr3|NW_01 8654711.1 | 31,696 | 175,849 |
| nssv550762 | Remapped | Good | NW_018654711.1:g.( ?_31696)_(175849_? )del | GRCh38.p12 | Second Pass | NW_018654711.1 | Chr3|NW_01 8654711.1 | 31,696 | 175,849 |
| nssv550763 | Remapped | Good | NW_018654711.1:g.( ?_31696)_(175849_? )del | GRCh38.p12 | Second Pass | NW_018654711.1 | Chr3|NW_01 8654711.1 | 31,696 | 175,849 |
| nssv550764 | Remapped | Good | NW_018654711.1:g.( ?_31696)_(175849_? )del | GRCh38.p12 | Second Pass | NW_018654711.1 | Chr3|NW_01 8654711.1 | 31,696 | 175,849 |
| nssv550765 | Remapped | Good | NW_018654711.1:g.( ?_31696)_(175849_? )del | GRCh38.p12 | Second Pass | NW_018654711.1 | Chr3|NW_01 8654711.1 | 31,696 | 175,849 |
| nssv550766 | Remapped | Good | NW_018654711.1:g.( ?_31696)_(175849_? )del | GRCh38.p12 | Second Pass | NW_018654711.1 | Chr3|NW_01 8654711.1 | 31,696 | 175,849 |
| nssv550754 | Remapped | Perfect | NC_000003.12:g.(?_ 84831663)_(8498233 5_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 84,831,663 | 84,982,335 |
| nssv550755 | Remapped | Perfect | NC_000003.12:g.(?_ 84831663)_(8498233 5_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 84,831,663 | 84,982,335 |
| nssv550756 | Remapped | Perfect | NC_000003.12:g.(?_ 84831663)_(8498233 5_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 84,831,663 | 84,982,335 |
| nssv550757 | Remapped | Perfect | NC_000003.12:g.(?_ 84831663)_(8498233 5_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 84,831,663 | 84,982,335 |
| nssv550758 | Remapped | Perfect | NC_000003.12:g.(?_ 84831663)_(8498233 5_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 84,831,663 | 84,982,335 |
| nssv550759 | Remapped | Perfect | NC_000003.12:g.(?_ 84831663)_(8498233 5_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 84,831,663 | 84,982,335 |
| nssv550760 | Remapped | Perfect | NC_000003.12:g.(?_ 84831663)_(8498233 5_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 84,831,663 | 84,982,335 |
| nssv550761 | Remapped | Perfect | NC_000003.12:g.(?_ 84831663)_(8498233 5_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 84,831,663 | 84,982,335 |
| nssv550762 | Remapped | Perfect | NC_000003.12:g.(?_ 84831663)_(8498233 5_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 84,831,663 | 84,982,335 |
| nssv550763 | Remapped | Perfect | NC_000003.12:g.(?_ 84831663)_(8498233 5_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 84,831,663 | 84,982,335 |
| nssv550764 | Remapped | Perfect | NC_000003.12:g.(?_ 84831663)_(8498233 5_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 84,831,663 | 84,982,335 |
| nssv550765 | Remapped | Perfect | NC_000003.12:g.(?_ 84831663)_(8498233 5_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 84,831,663 | 84,982,335 |
| nssv550766 | Remapped | Perfect | NC_000003.12:g.(?_ 84831663)_(8498233 5_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 84,831,663 | 84,982,335 |
| nssv550754 | Remapped | Perfect | NC_000003.11:g.(?_ 84880814)_(8503148 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 84,880,814 | 85,031,486 |
| nssv550755 | Remapped | Perfect | NC_000003.11:g.(?_ 84880814)_(8503148 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 84,880,814 | 85,031,486 |
| nssv550756 | Remapped | Perfect | NC_000003.11:g.(?_ 84880814)_(8503148 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 84,880,814 | 85,031,486 |
| nssv550757 | Remapped | Perfect | NC_000003.11:g.(?_ 84880814)_(8503148 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 84,880,814 | 85,031,486 |
| nssv550758 | Remapped | Perfect | NC_000003.11:g.(?_ 84880814)_(8503148 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 84,880,814 | 85,031,486 |
| nssv550759 | Remapped | Perfect | NC_000003.11:g.(?_ 84880814)_(8503148 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 84,880,814 | 85,031,486 |
| nssv550760 | Remapped | Perfect | NC_000003.11:g.(?_ 84880814)_(8503148 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 84,880,814 | 85,031,486 |
| nssv550761 | Remapped | Perfect | NC_000003.11:g.(?_ 84880814)_(8503148 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 84,880,814 | 85,031,486 |
| nssv550762 | Remapped | Perfect | NC_000003.11:g.(?_ 84880814)_(8503148 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 84,880,814 | 85,031,486 |
| nssv550763 | Remapped | Perfect | NC_000003.11:g.(?_ 84880814)_(8503148 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 84,880,814 | 85,031,486 |
| nssv550764 | Remapped | Perfect | NC_000003.11:g.(?_ 84880814)_(8503148 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 84,880,814 | 85,031,486 |
| nssv550765 | Remapped | Perfect | NC_000003.11:g.(?_ 84880814)_(8503148 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 84,880,814 | 85,031,486 |
| nssv550766 | Remapped | Perfect | NC_000003.11:g.(?_ 84880814)_(8503148 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 84,880,814 | 85,031,486 |
| nssv550754 | Submitted genomic | NC_000003.8:g.(?_8 4801715)_(84952387 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 84,801,715 | 84,952,387 | ||
| nssv550755 | Submitted genomic | NC_000003.8:g.(?_8 4801715)_(84952387 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 84,801,715 | 84,952,387 | ||
| nssv550756 | Submitted genomic | NC_000003.8:g.(?_8 4801715)_(84952387 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 84,801,715 | 84,952,387 | ||
| nssv550757 | Submitted genomic | NC_000003.8:g.(?_8 4801715)_(84952387 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 84,801,715 | 84,952,387 | ||
| nssv550758 | Submitted genomic | NC_000003.8:g.(?_8 4801715)_(84952387 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 84,801,715 | 84,952,387 | ||
| nssv550759 | Submitted genomic | NC_000003.8:g.(?_8 4801715)_(84952387 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 84,801,715 | 84,952,387 | ||
| nssv550760 | Submitted genomic | NC_000003.8:g.(?_8 4801715)_(84952387 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 84,801,715 | 84,952,387 | ||
| nssv550761 | Submitted genomic | NC_000003.8:g.(?_8 4801715)_(84952387 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 84,801,715 | 84,952,387 | ||
| nssv550762 | Submitted genomic | NC_000003.8:g.(?_8 4801715)_(84952387 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 84,801,715 | 84,952,387 | ||
| nssv550763 | Submitted genomic | NC_000003.8:g.(?_8 4801715)_(84952387 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 84,801,715 | 84,952,387 | ||
| nssv550764 | Submitted genomic | NC_000003.8:g.(?_8 4801715)_(84952387 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 84,801,715 | 84,952,387 | ||
| nssv550765 | Submitted genomic | NC_000003.8:g.(?_8 4801715)_(84952387 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 84,801,715 | 84,952,387 | ||
| nssv550766 | Submitted genomic | NC_000003.8:g.(?_8 4801715)_(84952387 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 84,801,715 | 84,952,387 |