nsv4683899
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:65,469
- Description:NC_000002.12:g.(?_9490157)_(9555625_?)dup AND Inflammatory skin and bowel disease, neonatal, 1
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 208 SVs from 32 studies. See in: genome view
Overlapping variant regions from other studies: 208 SVs from 32 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv4683899 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 9,490,157 | 9,555,625 |
nsv4683899 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 9,630,286 | 9,695,754 |
Variant Call Information
Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
---|---|---|---|---|---|---|---|
nssv16213626 | duplication | Multiple | Multiple | INFLAMMATORY SKIN AND BOWEL DISEASE, NEONATAL, 1; NISBD1; Inflammatory skin and bowel disease, neonatal 1; Neonatal inflammatory skin and bowel disease | Uncertain significance | ClinVar | RCV001031926.1, VCV000831366.1 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv16213626 | Remapped | Perfect | NC_000002.12:g.(?_ 9490157)_(9555625_ ?)dup | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 9,490,157 | 9,555,625 |
nssv16213626 | Submitted genomic | NC_000002.11:g.(?_ 9630286)_(9695754_ ?)dup | GRCh37 (hg19) | NC_000002.11 | Chr2 | 9,630,286 | 9,695,754 |
No validation data were submitted for this variant
Clinical Assertions
Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
---|---|---|---|---|---|---|---|
nssv16213626 | GRCh37: NC_000002.11:g.(?_9630286)_(9695754_?)dup | duplication | germline | INFLAMMATORY SKIN AND BOWEL DISEASE, NEONATAL, 1; NISBD1; Inflammatory skin and bowel disease, neonatal 1; Neonatal inflammatory skin and bowel disease | Uncertain significance | ClinVar | RCV001031926.1, VCV000831366.1 |