nsv4676189
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:4,123,766
- Description:
GRCh37/hg19 19p13.3(chr19:260912-4384674)x3 AND See cases
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 25208 SVs from 117 studies. See in: genome view
Overlapping variant regions from other studies: 25208 SVs from 117 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4676189 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 260,912 | 4,384,677 |
| nsv4676189 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000019.9 | Chr19 | 260,912 | 4,384,674 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv16209035 | copy number gain | Multiple | Multiple | See cases | Pathogenic | ClinVar | RCV001007443.1, VCV000816518.1 | 3 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16209035 | Remapped | Perfect | NC_000019.10:g.(?_ 260912)_(4384677_? )dup | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 260,912 | 4,384,677 |
| nssv16209035 | Submitted genomic | NC_000019.9:g.(?_2 60912)_(4384674_?) dup | GRCh37 (hg19) | NC_000019.9 | Chr19 | 260,912 | 4,384,674 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv16209035 | GRCh37: NC_000019.9:g.(?_260912)_(4384674_?)dup | copy number gain | unknown | See cases | Pathogenic | ClinVar | RCV001007443.1, VCV000816518.1 | 3 |