nsv4675965
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:30,005
- Description:GRCh37/hg19 6q23.3(chr6:135710490-135740494)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 146 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 146 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4675965 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 135,389,352 | 135,419,356 |
| nsv4675965 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 135,710,490 | 135,740,494 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv16208088 | copy number loss | Multiple | Multiple | not provided | Uncertain significance | ClinVar | RCV001005850.1, VCV000814873.1 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16208088 | Remapped | Perfect | NC_000006.12:g.(?_ 135389352)_(135419 356_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 135,389,352 | 135,419,356 |
| nssv16208088 | Submitted genomic | NC_000006.11:g.(?_ 135710490)_(135740 494_?)del | GRCh37 (hg19) | NC_000006.11 | Chr6 | 135,710,490 | 135,740,494 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv16208088 | GRCh37: NC_000006.11:g.(?_135710490)_(135740494_?)del | copy number loss | germline | not provided | Uncertain significance | ClinVar | RCV001005850.1, VCV000814873.1 | 1 |