nsv4674739
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:4,196,254
- Description:GRCh37/hg19 2q14.2-14.3(chr2:118903294-123099547)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 9185 SVs from 104 studies. See in: genome view
Overlapping variant regions from other studies: 9186 SVs from 104 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4674739 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 118,145,718 | 122,341,971 |
| nsv4674739 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 118,903,294 | 123,099,547 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv16207828 | copy number loss | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV001005310.1, VCV000814298.1 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16207828 | Remapped | Perfect | NC_000002.12:g.(?_ 118145718)_(122341 971_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 118,145,718 | 122,341,971 |
| nssv16207828 | Submitted genomic | NC_000002.11:g.(?_ 118903294)_(123099 547_?)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 118,903,294 | 123,099,547 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv16207828 | GRCh37: NC_000002.11:g.(?_118903294)_(123099547_?)del | copy number loss | germline | not provided | Pathogenic | ClinVar | RCV001005310.1, VCV000814298.1 | 1 |