nsv4674589
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:13,689,918
- Description:GRCh37/hg19 4q13.3-21.23(chr4:72680879-86426232)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 34896 SVs from 126 studies. See in: genome view
Overlapping variant regions from other studies: 34876 SVs from 126 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4674589 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 71,815,162 | 85,505,079 |
| nsv4674589 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 72,680,879 | 86,426,232 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv16207962 | copy number loss | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV001005556.1, VCV000814566.1 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16207962 | Remapped | Good | NC_000004.12:g.(?_ 71815162)_(8550507 9_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 71,815,162 | 85,505,079 |
| nssv16207962 | Submitted genomic | NC_000004.11:g.(?_ 72680879)_(8642623 2_?)del | GRCh37 (hg19) | NC_000004.11 | Chr4 | 72,680,879 | 86,426,232 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv16207962 | GRCh37: NC_000004.11:g.(?_72680879)_(86426232_?)del | copy number loss | germline | not provided | Pathogenic | ClinVar | RCV001005556.1, VCV000814566.1 | 1 |