nsv4348774
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:15,038,781
- Description:GRCh37/hg19 18p11.32-11.21(chr18:136226-15175005)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 46511 SVs from 130 studies. See in: genome view
Overlapping variant regions from other studies: 46517 SVs from 130 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4348774 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 136,226 | 15,175,006 |
| nsv4348774 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 136,226 | 15,175,005 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv16208986 | copy number loss | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV001006953.1, VCV000815987.1 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16208986 | Remapped | Perfect | NC_000018.10:g.(?_ 136226)_(15175006_ ?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 136,226 | 15,175,006 |
| nssv16208986 | Submitted genomic | NC_000018.9:g.(?_1 36226)_(15175005_? )del | GRCh37 (hg19) | NC_000018.9 | Chr18 | 136,226 | 15,175,005 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv16208986 | GRCh37: NC_000018.9:g.(?_136226)_(15175005_?)del | copy number loss | germline | not provided | Pathogenic | ClinVar | RCV001006953.1, VCV000815987.1 | 1 |