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dbVar

Database of genomic structural variation

nsv433393

Organism: Homo sapiens

Study:nstd14 (Cooper et al. 2008)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:26,530

Publication(s):Cooper et al. 2008

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1513 SVs from 87 studies. See in: genome view

Remapped(Score: Perfect):142,060,998-142,087,527

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv433393	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000007.14	Chr7	142,060,998	142,087,527
nsv433393	Remapped	Perfect	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NT_187562.1	Chr7\|NT_18 7562.1	22,878	49,407
nsv433393	Remapped	Perfect	GRCh37.p13	Primary Assembly	Second Pass	NC_000007.13	Chr7	141,760,798	141,787,327
nsv433393	Remapped	Perfect	GRCh37.p13	PATCHES	First Pass	NW_003571040.1	Chr7\|NW_00 3571040.1	202,949	229,478
nsv433393	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000007.11	Chr7	141,213,982	141,240,511

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv463274	copy number gain	NA12156	SNP array	SNP genotyping analysis	38

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv463274	Remapped	Perfect	NT_187562.1:g.(?_2 2878)_(49407_?)dup	GRCh38.p12	Second Pass	NT_187562.1	Chr7\|NT_18 7562.1	22,878	49,407
nssv463274	Remapped	Perfect	NC_000007.14:g.(?_ 142060998)_(142087 527_?)dup	GRCh38.p12	First Pass	NC_000007.14	Chr7	142,060,998	142,087,527
nssv463274	Remapped	Perfect	NW_003571040.1:g.( ?_202949)_(229478_ ?)dup	GRCh37.p13	First Pass	NW_003571040.1	Chr7\|NW_00 3571040.1	202,949	229,478
nssv463274	Remapped	Perfect	NC_000007.13:g.(?_ 141760798)_(141787 327_?)dup	GRCh37.p13	Second Pass	NC_000007.13	Chr7	141,760,798	141,787,327
nssv463274	Submitted genomic		NC_000007.11:g.(?_ 141213982)_(141240 511_?)dup	NCBI35 (hg17)		NC_000007.11	Chr7	141,213,982	141,240,511

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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