nsv3923885
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37, GRCh38, NCBI36
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:754,600
- Description:GRCh38/hg38 19p13.3(chr19:4008560-4763159)x3 AND See cases
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 3718 SVs from 89 studies. See in: genome view
Overlapping variant regions from other studies: 3720 SVs from 89 studies. See in: genome view
Overlapping variant regions from other studies: 799 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Assembly | Assembly Unit | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|
| nsv3923885 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000019.10 | Chr19 | 4,008,560 | 4,763,159 |
| nsv3923885 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000019.9 | Chr19 | 4,008,558 | 4,763,171 |
| nsv3923885 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000019.8 | Chr19 | 3,959,558 | 4,714,171 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15121173 | copy number gain | Multiple | Multiple | See cases | Pathogenic | ClinVar | RCV000052880.4, VCV000059083.1 | 3 |
Variant Call Placement Information
| Variant Call ID | Placement Type | HGVS | Assembly | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|
| nssv15121173 | Submitted genomic | NC_000019.10:g.(?_ 4008560)_(4763159_ ?)dup | GRCh38 (hg38) | NC_000019.10 | Chr19 | 4,008,560 | 4,763,159 |
| nssv15121173 | Submitted genomic | NC_000019.9:g.(?_4 008558)_(4763171_? )dup | GRCh37 (hg19) | NC_000019.9 | Chr19 | 4,008,558 | 4,763,171 |
| nssv15121173 | Submitted genomic | NC_000019.8:g.(?_3 959558)_(4714171_? )dup | NCBI36 (hg18) | NC_000019.8 | Chr19 | 3,959,558 | 4,714,171 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15121173 | GRCh37: NC_000019.9:g.(?_4008558)_(4763171_?)dup, GRCh38: NC_000019.10:g.(?_4008560)_(4763159_?)dup, NCBI36: NC_000019.8:g.(?_3959558)_(4714171_?)dup | copy number gain | de novo | See cases | Pathogenic | ClinVar | RCV000052880.4, VCV000059083.1 | 3 |