nsv3923402
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37, GRCh38, NCBI36
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:3,204,112
- Description:GRCh38/hg38 13q12.3-13.1(chr13:29654134-32858245)x1 AND See cases
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 7932 SVs from 116 studies. See in: genome view
Overlapping variant regions from other studies: 7932 SVs from 116 studies. See in: genome view
Overlapping variant regions from other studies: 2141 SVs from 30 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Assembly | Assembly Unit | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|
| nsv3923402 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000013.11 | Chr13 | 29,654,134 | 32,858,245 |
| nsv3923402 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000013.10 | Chr13 | 30,228,271 | 33,432,383 |
| nsv3923402 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000013.9 | Chr13 | 29,126,271 | 32,330,383 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15119799 | copy number loss | Multiple | Multiple | See cases | Pathogenic | ClinVar | RCV000051372.5, VCV000057637.1 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | HGVS | Assembly | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|
| nssv15119799 | Submitted genomic | NC_000013.11:g.(?_ 29654134)_(3285824 5_?)del | GRCh38 (hg38) | NC_000013.11 | Chr13 | 29,654,134 | 32,858,245 |
| nssv15119799 | Submitted genomic | NC_000013.10:g.(?_ 30228271)_(3343238 3_?)del | GRCh37 (hg19) | NC_000013.10 | Chr13 | 30,228,271 | 33,432,383 |
| nssv15119799 | Submitted genomic | NC_000013.9:g.(?_2 9126271)_(32330383 _?)del | NCBI36 (hg18) | NC_000013.9 | Chr13 | 29,126,271 | 32,330,383 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15119799 | GRCh37: NC_000013.10:g.(?_30228271)_(33432383_?)del, GRCh38: NC_000013.11:g.(?_29654134)_(32858245_?)del, NCBI36: NC_000013.9:g.(?_29126271)_(32330383_?)del | copy number loss | not provided | See cases | Pathogenic | ClinVar | RCV000051372.5, VCV000057637.1 | 1 |