nsv3914649
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37, GRCh38, NCBI36
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:35,809,390
- Description:GRCh38/hg38 5p15.33-13.2(chr5:22149-35831538)x1 AND See cases
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 117248 SVs from 143 studies. See in: genome view
Overlapping variant regions from other studies: 117284 SVs from 143 studies. See in: genome view
Overlapping variant regions from other studies: 31002 SVs from 41 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Assembly | Assembly Unit | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|
| nsv3914649 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000005.10 | Chr5 | 22,149 | 35,831,538 |
| nsv3914649 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 22,149 | 35,831,640 |
| nsv3914649 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 75,149 | 35,867,397 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15147416 | copy number loss | Multiple | Multiple | See cases | Pathogenic | ClinVar | RCV000138888.5, VCV000149959.2 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | HGVS | Assembly | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|
| nssv15147416 | Submitted genomic | NC_000005.10:g.(?_ 22149)_(35831538_? )del | GRCh38 (hg38) | NC_000005.10 | Chr5 | 22,149 | 35,831,538 |
| nssv15147416 | Submitted genomic | NC_000005.9:g.(?_2 2149)_(35831640_?) del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 22,149 | 35,831,640 |
| nssv15147416 | Submitted genomic | NC_000005.8:g.(?_7 5149)_(35867397_?) del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 75,149 | 35,867,397 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15147416 | GRCh37: NC_000005.9:g.(?_22149)_(35831640_?)del, GRCh38: NC_000005.10:g.(?_22149)_(35831538_?)del, NCBI36: NC_000005.8:g.(?_75149)_(35867397_?)del | copy number loss | not provided | See cases | Pathogenic | ClinVar | RCV000138888.5, VCV000149959.2 | 1 |