nsv3909519
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:30,125,812
- Description:GRCh37/hg19 18q21.1-23(chr18:47656799-78014123) AND not specified
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 95732 SVs from 135 studies. See in: genome view
Overlapping variant regions from other studies: 95596 SVs from 135 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3909519 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 50,130,429 | 80,256,240 |
| nsv3909519 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 47,656,799 | 78,014,123 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|---|---|
| nssv17969172 | copy number loss | Multiple | Multiple | not specified | Pathogenic | ClinVar | RCV002052636.3, VCV001526617.3 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17969172 | Remapped | Good | NC_000018.10:g.(?_ 50130429)_(8025624 0_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 50,130,429 | 80,256,240 |
| nssv17969172 | Submitted genomic | NC_000018.9:g.(?_4 7656799)_(78014123 _?)del | GRCh37 (hg19) | NC_000018.9 | Chr18 | 47,656,799 | 78,014,123 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|---|---|
| nssv17969172 | GRCh37: NC_000018.9:g.(?_47656799)_(78014123_?)del | copy number loss | germline | not specified | Pathogenic | ClinVar | RCV002052636.3, VCV001526617.3 |