nsv3908644
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:3,252,658
- Description:GRCh37/hg19 16q13-21(chr16:56950941-60203590)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 9334 SVs from 104 studies. See in: genome view
Overlapping variant regions from other studies: 9333 SVs from 104 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3908644 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 56,917,029 | 60,169,686 |
| nsv3908644 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000016.9 | Chr16 | 56,950,941 | 60,203,590 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15155490 | copy number loss | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV000683823.2, VCV000564334.2 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15155490 | Remapped | Perfect | NC_000016.10:g.(?_ 56917029)_(6016968 6_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 56,917,029 | 60,169,686 |
| nssv15155490 | Submitted genomic | NC_000016.9:g.(?_5 6950941)_(60203590 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 56,950,941 | 60,203,590 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15155490 | GRCh37: NC_000016.9:g.(?_56950941)_(60203590_?)del | copy number loss | unknown | not provided | Pathogenic | ClinVar | RCV000683823.2, VCV000564334.2 | 1 |