nsv3906668
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:77,913
- Description:GRCh37/hg19 12p13.33(chr12:191619-269531)x3 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 543 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 254 SVs from 50 studies. See in: genome view
Overlapping variant regions from other studies: 351 SVs from 54 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3906668 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000012.12 | Chr12 | 82,453 | 160,365 |
| nsv3906668 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NW_003571049.1 | Chr12|NW_0 03571049.1 | 76,468 | 154,380 |
| nsv3906668 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000012.11 | Chr12 | 191,619 | 269,531 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15157284 | copy number gain | Multiple | Multiple | not provided | Benign | ClinVar | RCV000737728.2, VCV000601092.2 | 3 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15157284 | Remapped | Perfect | NW_003571049.1:g.( ?_76468)_(154380_? )dup | GRCh38.p12 | Second Pass | NW_003571049.1 | Chr12|NW_0 03571049.1 | 76,468 | 154,380 |
| nssv15157284 | Remapped | Perfect | NC_000012.12:g.(?_ 82453)_(160365_?)d up | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 82,453 | 160,365 |
| nssv15157284 | Submitted genomic | NC_000012.11:g.(?_ 191619)_(269531_?) dup | GRCh37 (hg19) | NC_000012.11 | Chr12 | 191,619 | 269,531 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15157284 | GRCh37: NC_000012.11:g.(?_191619)_(269531_?)dup | copy number gain | unknown | not provided | Benign | ClinVar | RCV000737728.2, VCV000601092.2 | 3 |