nsv3905489
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:42,089,904
- Description:GRCh37/hg19 10q23.32-26.3(chr10:93283493-135427143)x3 AND See cases
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 113863 SVs from 140 studies. See in: genome view
Overlapping variant regions from other studies: 113403 SVs from 140 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3905489 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 91,523,736 | 133,613,639 |
| nsv3905489 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000010.10 | Chr10 | 93,283,493 | 135,427,143 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15161673 | copy number gain | Multiple | Multiple | See cases | Pathogenic | ClinVar | RCV000510972.2, VCV000443323.2 | 3 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15161673 | Remapped | Good | NC_000010.11:g.(?_ 91523736)_(1336136 39_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 91,523,736 | 133,613,639 |
| nssv15161673 | Submitted genomic | NC_000010.10:g.(?_ 93283493)_(1354271 43_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 93,283,493 | 135,427,143 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15161673 | GRCh37: NC_000010.10:g.(?_93283493)_(135427143_?)dup | copy number gain | not provided | See cases | Pathogenic | ClinVar | RCV000510972.2, VCV000443323.2 | 3 |