nsv3904811
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:8,967,959
- Description:GRCh37/hg19 9q31.3-33.2(chr9:114299780-123267736)x1 AND See cases
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 21979 SVs from 121 studies. See in: genome view
Overlapping variant regions from other studies: 21979 SVs from 121 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv3904811 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 111,537,500 | 120,505,458 |
nsv3904811 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000009.11 | Chr9 | 114,299,780 | 123,267,736 |
Variant Call Information
Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
---|---|---|---|---|---|---|---|---|
nssv15142526 | copy number loss | Multiple | Multiple | See cases | Pathogenic | ClinVar | RCV000511049.2, VCV000442115.2 | 1 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv15142526 | Remapped | Perfect | NC_000009.12:g.(?_ 111537500)_(120505 458_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 111,537,500 | 120,505,458 |
nssv15142526 | Submitted genomic | NC_000009.11:g.(?_ 114299780)_(123267 736_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 114,299,780 | 123,267,736 |
No validation data were submitted for this variant
Clinical Assertions
Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
---|---|---|---|---|---|---|---|---|
nssv15142526 | GRCh37: NC_000009.11:g.(?_114299780)_(123267736_?)del | copy number loss | not provided | See cases | Pathogenic | ClinVar | RCV000511049.2, VCV000442115.2 | 1 |