nsv3902831
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:31,604,814
- Description:GRCh37/hg19 18q21.1-23(chr18:46177798-78014123)x1 AND See cases
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 99636 SVs from 135 studies. See in: genome view
Overlapping variant regions from other studies: 99500 SVs from 135 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3902831 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 48,651,427 | 80,256,240 |
| nsv3902831 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 46,177,798 | 78,014,123 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15150331 | copy number loss | Multiple | Multiple | See cases | Pathogenic | ClinVar | RCV000511759.2, VCV000441661.2 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15150331 | Remapped | Good | NC_000018.10:g.(?_ 48651427)_(8025624 0_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 48,651,427 | 80,256,240 |
| nssv15150331 | Submitted genomic | NC_000018.9:g.(?_4 6177798)_(78014123 _?)del | GRCh37 (hg19) | NC_000018.9 | Chr18 | 46,177,798 | 78,014,123 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15150331 | GRCh37: NC_000018.9:g.(?_46177798)_(78014123_?)del | copy number loss | not provided | See cases | Pathogenic | ClinVar | RCV000511759.2, VCV000441661.2 | 1 |