nsv3901138
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:7,385
- Description:GRCh37/hg19 12q24.13(chr12:113012673-113020057)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 202 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 202 SVs from 42 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3901138 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000012.12 | Chr12 | 112,574,869 | 112,582,253 |
| nsv3901138 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000012.11 | Chr12 | 113,012,673 | 113,020,057 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15160084 | copy number loss | Multiple | Multiple | not provided | Benign | ClinVar | RCV000738058.2, VCV000601422.2 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15160084 | Remapped | Perfect | NC_000012.12:g.(?_ 112574869)_(112582 253_?)del | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 112,574,869 | 112,582,253 |
| nssv15160084 | Submitted genomic | NC_000012.11:g.(?_ 113012673)_(113020 057_?)del | GRCh37 (hg19) | NC_000012.11 | Chr12 | 113,012,673 | 113,020,057 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15160084 | GRCh37: NC_000012.11:g.(?_113012673)_(113020057_?)del | copy number loss | unknown | not provided | Benign | ClinVar | RCV000738058.2, VCV000601422.2 | 1 |