nsv3900667
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:11,613
- Description:GRCh37/hg19 17q25.1(chr17:72246101-72257713)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 243 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 243 SVs from 42 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3900667 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000017.11 | Chr17 | 74,249,962 | 74,261,574 |
| nsv3900667 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000017.10 | Chr17 | 72,246,101 | 72,257,713 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15159205 | copy number loss | Multiple | Multiple | not provided | Benign | ClinVar | RCV000739665.2, VCV000603029.2 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15159205 | Remapped | Perfect | NC_000017.11:g.(?_ 74249962)_(7426157 4_?)del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 74,249,962 | 74,261,574 |
| nssv15159205 | Submitted genomic | NC_000017.10:g.(?_ 72246101)_(7225771 3_?)del | GRCh37 (hg19) | NC_000017.10 | Chr17 | 72,246,101 | 72,257,713 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15159205 | GRCh37: NC_000017.10:g.(?_72246101)_(72257713_?)del | copy number loss | unknown | not provided | Benign | ClinVar | RCV000739665.2, VCV000603029.2 | 1 |