nsv3900231
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:10,279,996
- Description:GRCh37/hg19 8p23.3-23.1(chr8:10213-10197718)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 48512 SVs from 141 studies. See in: genome view
Overlapping variant regions from other studies: 12246 SVs from 115 studies. See in: genome view
Overlapping variant regions from other studies: 48164 SVs from 142 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3900231 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 60,213 | 10,340,208 |
| nsv3900231 | Remapped | Pass | GRCh38.p12 | PATCHES | Second Pass | NW_018654717.1 | Chr8|NW_01 8654717.1 | 1 | 5,513,617 |
| nsv3900231 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000008.10 | Chr8 | 10,213 | 10,197,718 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15168702 | copy number loss | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV000747247.2, VCV000610611.2 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15168702 | Remapped | Pass | NW_018654717.1:g.( ?_1)_(5513617_?)de l | GRCh38.p12 | Second Pass | NW_018654717.1 | Chr8|NW_01 8654717.1 | 1 | 5,513,617 |
| nssv15168702 | Remapped | Good | NC_000008.11:g.(?_ 60213)_(10340208_? )del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 60,213 | 10,340,208 |
| nssv15168702 | Submitted genomic | NC_000008.10:g.(?_ 10213)_(10197718_? )del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 10,213 | 10,197,718 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15168702 | GRCh37: NC_000008.10:g.(?_10213)_(10197718_?)del | copy number loss | unknown | not provided | Pathogenic | ClinVar | RCV000747247.2, VCV000610611.2 | 1 |